The Australian e-Health Research Centre
The Australian e-Health Research Centre (AEHRC) is CSIRO’s digital health research program.
Pinned Repositories
cvt2distilgpt2
Improving Chest X-Ray Report Generation by Leveraging Warm-Starting
cxrmate
CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation
fhir-owl
Transforms OWL ontologies into FHIR code systems.
LAAT
A Label Attention Model for ICD Coding from Clinical Text
Mirorr
Mirorr: Multimodal Image Registration using blOck-matching and Robust Regression
ontoserver-deploy
Sample deployment project for Ontoserver
pathling
Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.
smart-forms
React-based form renderer implementing Structured Data Capture (SDC) FHIR specification
snorocket
The Snorocket Description Logic classifier for EL++ with concrete domains support
VariantSpark
machine learning for genomic variants
The Australian e-Health Research Centre's Repositories
aehrc/VariantSpark
machine learning for genomic variants
aehrc/pathling
Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.
aehrc/smart-forms
React-based form renderer implementing Structured Data Capture (SDC) FHIR specification
aehrc/ontoserver-deploy
Sample deployment project for Ontoserver
aehrc/cxrmate
CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation
aehrc/mcp-fhir-tools
A collection of tools for working with FHIR data, designed to be used with Large Language Models via the Model Context Protocol.
aehrc/redcap_pedigree_editor
Redcap External Module to allow the entry of a pedigree diagram, storing the result as a FHIR resource
aehrc/terraform-aws-serverless-beacon
Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information
aehrc/smart-forms-ig
aehrc/fhir-bulk-java
A Java client for the Bulk Data Export operation within the FHIR Bulk Data Access IG.
aehrc/SMART-EHR-Launcher
An EHR simulator dashboard testing tool to launch SMART on FHIR apps
aehrc/jre-docker
Docker images for building base images capable of running Java applications.
aehrc/cxrmate-ed
aehrc/genomator
Privacy-hardened, hallucination-resistant synthetic data generator.
aehrc/org.hl7.fhir.core
aehrc/smart-launcher-v2
SMART Launcher
aehrc/snap2snomed
Development version of Snap2Snomed. Please raise issues here: https://github.com/IHTSDO/snap2snomed
aehrc/snapagogo
A fork of snap2snomed with a scope expanded beyond just mapping to SNOMED CT, hence the renaming
aehrc/snowstorm-java-client
Java client for Snowstorm
aehrc/aehrc-helm
aehrc/au-fhir-inferno
Aggregator for Australian Inferno test suites
aehrc/bulk-data-implementations
listing of bulk FHIR client implementations
aehrc/DIFFERENCE-PoC
An EHR simulator dashboard testing tool to launch SMART on FHIR apps
aehrc/fhir-gateway
A generic proxy server for applying access-control policies for a FHIR-store.
aehrc/ig-registry
Registry of published implementation guides
aehrc/IggyAPI
IggyAPI is a FastAPI-based tool for managing FHIR Implementation Guides (IGs) and StructureDefinitions, It offers endpoints to search IGs, list profiles, and fetch StructureDefinitions with optional narrative stripping. Featuring caching, error handling, and Swagger UI.
aehrc/logical-model-web
aehrc/sct-implementation-demonstrator
AU localisation of SNOMED CT Implementation Demonstrators
aehrc/smart-health-checks-inferno
Inferno test kit for testing API interactions with respect to Smart Health Checks capability statements.
aehrc/snowstorm
Scalable SNOMED CT Terminology Server using Elasticsearch