aehrc/VariantSpark

Issues

• au.csiro.aehrc.third.hail-is issue

  #239 opened 3 months ago by ChristinaXu2017
  1

• Clustering sample

  #165 opened 9 months ago by TaniaCuppens
  2

• Fix the readme links and video

  #236 opened 10 months ago by rocreguant
  1

• Error when loading json model

  #170 opened 10 months ago by BMJHayward
  1

• Make VS hail independent for the python API

  #237 opened 10 months ago by rocreguant
  0

• Decouple Training and Association

  #148 opened 10 months ago by ArashBayatDev
  1

• RandomForest Model Java <-> JSON

  #149 opened 5 years ago by ArashBayatDev
  1

• RandomForest Model Java <-> R

  #150 opened 10 months ago by ArashBayatDev
  1

• Variable training parameter

  #154 opened 10 months ago by ArashBayatDev
  1

• Variable mTry at each node

  #155 opened 5 years ago by ArashBayatDev
  1

• Tree View of the output JSON RandomForest model.

  #156 opened 10 months ago by ArashBayatDev
  1

• Visualize Trees

  #160 opened 10 months ago by ArashBayatDev
  1

• num Case/Control in JSON model file

  #161 opened 10 months ago by ArashBayatDev
  2

• Align code style checks with IntelJ fomatting

  #185 opened 10 months ago by piotrszul
  0

• Make pull request to hail with jar config changes.

  #187 opened 10 months ago by piotrszul
  0

• Grid Search for Parameter Optimisation

  #197 opened 4 years ago by lm-fsng
  1

• Install on our supercomputer throws ```java.lang.IncompatibleClassChangeError: Inconsistent constant pool data in classfile for class au/csiro/pbdava/ssparkle/spark/SparkApp. Method 'java.lang.String $anonfun$spark$1(au.csiro.pbdava.ssparkle.spark.SparkApp)' at index 118 is CONSTANT_MethodRef and should be CONSTANT_InterfaceMethodRef```

  #231 opened a year ago by surak
  1

• Add instruction on how to use VariantSpark available on AWS Marketplace

  #158 opened a year ago by ArashBayatDev
  0

• add p-value calculation to HAIL implementation

  #198 opened a year ago by natwine
  0

• Install on any machine throws ``` java.lang.IncompatibleClassChangeError```

  #232 opened a year ago by surak
  1

• Can we remove the Hail monkey patches after this Hail PR?

  #228 opened 2 years ago by danking
  1

• fit_trees() unable to run due to IncompatibleClassChangeError

  #229 opened 2 years ago by chrysania
  2

• Reporting a vulnerability

  #230 opened 2 years ago by igibek
  0

• Report Training process in Hail interface

  #152 opened 2 years ago by ArashBayatDev
  0

• run on single chromosomes?

  #224 opened 2 years ago by sshanshans
  1

• HADOOP ERROR SERVICE AWS....

  #217 opened 2 years ago by cmorris2945
  9

• How to use vcf file?

  #216 opened 2 years ago by cmorris2945
  4

• Migrate to Spark 3.1

  #200 opened 2 years ago by piotrszul
  1

• Integrate python build with maven and revise deployment with github actions.

  #214 opened 2 years ago by piotrszul
  0

• automate pvalue calculation in VariantSpark pipeline

  #201 opened 2 years ago by natwine
  0

• Make the covariate calculation part of RF

  #193 opened 3 years ago by BauerLab
  3

• optimise VariantSpark for large sample size (n>50K)

  #204 opened 3 years ago by natwine
  1

• Add split variable count to hail output

  #205 opened 3 years ago by piotrszul
  0

• Add variable count extraction from json model

  #199 opened 3 years ago by piotrszul
  0

• Update the Cloud Marketplace example Notebooks to include logistic regression covariates

  #192 opened 4 years ago by BauerLab
  1

• Improve release and versioning

  #194 opened 4 years ago by piotrszul
  1

• Additional support for prediction

  #191 opened 4 years ago by piotrszul
  1

• Align python code formatting between pylind and inteliJ

  #188 opened 4 years ago by piotrszul
  0

• Migrate CI to Github Actions

  #183 opened 4 years ago by piotrszul
  0

• Add version information to command line and python interfaces

  #180 opened 4 years ago by piotrszul
  0

• Trim the documentation

  #178 opened 4 years ago by piotrszul
  0

• Fix hail package documentation at read the docs.

  #176 opened 4 years ago by piotrszul
  0

• Update/write python docs for hail interface

  #173 opened 4 years ago by piotrszul
  0

• Update documentation and examples for 0.3 release.

  #171 opened 4 years ago by piotrszul
  0

• uncalled genotype issue

  #164 opened 4 years ago by ArashBayatDev
  1

• Separate training command

  #168 opened 4 years ago by BMJHayward
  0

• Metadata in model files

  #153 opened 5 years ago by ArashBayatDev
  0

• Merge Multiple RandomForest Model Files

  #151 opened 5 years ago by ArashBayatDev
  0

• Saving RandomForest model continuously after each batch of trees

  #147 opened 5 years ago by ArashBayatDev
  0

• Fix compiler warnings including deprecation

  #146 opened 5 years ago by piotrszul
  0