afg1
Bioinformatician @RNAcentral, part of EMBL-EBI in Cambridge, UK. Formerly part of @rrr-uom-projects
Pinned Repositories
cad2gdml
Simple program using CADMesh and Geant4 to export a GDML file from a CAD file (e.g. STL)
DataClassifier
Quick and dirty script to enable manual classification of images. Requires PyQt5
keyboard
RadNetAIDemo
Notebook for the radnet AI live coding session
seq-feat
Sequence features in Rust!
SOBPtools
A couple of python scripts I wrote to produce spread out bragg peak profiles in 2D (i.e. depth-dose curves)
trismus-atlas
A trismus related OAR atlas, developed by Dr Christina Hague, code by me. Rehosted here because UoM version is offline
rnacentral-import-pipeline
RNAcentral data import pipeline
rnacentral-webcode
RNAcentral website source code
FLARE21
https://flare.grand-challenge.org/FLARE21/
afg1's Repositories
afg1/progressive_build
Fast gene finder for expression atlas
afg1/DigitalHealthWorkshop
afg1/keyboard
afg1/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
afg1/trismus-atlas
A trismus related OAR atlas, developed by Dr Christina Hague, code by me. Rehosted here because UoM version is offline
afg1/D2_LuxConsortia
D2_LuxConsortia
afg1/afg1.github.io
afg1/DataClassifier
Quick and dirty script to enable manual classification of images. Requires PyQt5
afg1/ImagingInRadiotherapy
Course materials for the Manchester Imaging in Radiotherapy module
afg1/jedi-colombia
Repository of code used for the JEDI workshop in Colombia, 11-15 Feb 2019
afg1/pymining
image based data mining in python/numpy
afg1/RTMLExamples
RTML example notebooks
afg1/SoundCost
An image registration code in which the cost function in sonic!
afg1/Geant4-install
afg1/colourPageCount
Little utility for counting the number of colour pages in a pdf. Requires ghostscript.
afg1/cad2gdml
Simple program using CADMesh and Geant4 to export a GDML file from a CAD file (e.g. STL)
afg1/Geant4-example
Quick and dirty Geant4 example. Shows command based scorers, which are cool
afg1/G4PRNG_tests
Quick and dirty testing of G4 PRNGs using TestU01 library
afg1/neutronProduction
Simulation of neutron yield, written in c++ using Geant4
afg1/thread-utils
Some handy bits of code I wrote while mucking about with multithreaded codes. These things may or may not be useful
afg1/SOBPtools
A couple of python scripts I wrote to produce spread out bragg peak profiles in 2D (i.e. depth-dose curves)
afg1/Geant4-Generic
afg1/TinyArcs
An implementation of a particle tracking method based on tiny arcs. Uses pthreads to go faster and allows several magnet types to be used
afg1/SimpleDispatcher
Simple dispatcher program written in c++. Uses openmp and subprocesses to dispatch a program however many times
afg1/G4MTtest
Test code for geant4 MT