Pinned Repositories
avTAD
Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
ChromatinCompartments
Compartments calling for published Hi-C datasets
DPDchrom_input_parser
fontanka
Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling fountains from cool Hi-C files.
pairtools
CLI tools to process mapped Hi-C data
RedClib
Red-C data processing
GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
cooltools
The tools for your .cool's
open2c_examples
pairtools
Extract 3D contacts (.pairs) from sequencing alignments
agalitsyna's Repositories
agalitsyna/TADcalling
agalitsyna/Connect4
Monte Carlo Tree Search Based AI Connect 4 Bot
agalitsyna/2017
Materials used during #NGSchool2017