agentmess
I do research on medical imaging methods, mostly using Magnetic Resonance Imaging (MRI)
University of California - San FranciscoUnited States
Pinned Repositories
academic-kickstart
binder-octave
An example of using Octave on mybinder.org
Flip-Angle-Design-Toolbox
Tools for designing optimal flip angle schemes for hyperpolarized carbon-13 magnetic resonance spectroscopy
git-tutorial-test
Prostate-Cancer-Analysis-Methods-Paper-2018
Simulation code for "Investigation of Analysis Methods for Hyperpolarized 13C-pyruvate Metabolic MRI in Prostate Cancer Patients"
hyperpolarized-mri-toolbox
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
LongT2-Suppression-Pulses
Long-T2 suppression RF pulses for MRI of short and ultrashort T2 components
MRI-education-resources
Resources for learning the principles of magnetic resonance imaging (MRI)
Radial-Field-of-Views
Radial sampling patterns in frequency space to support anisotropic field of views (FOVs) in the dual domain
pulmonary-MRI-reconstruction
Tools for reconstructing Pulmonary MRI datasets to manage motion
agentmess's Repositories
agentmess/Prostate-Cancer-Analysis-Methods-Paper-2018
Simulation code for "Investigation of Analysis Methods for Hyperpolarized 13C-pyruvate Metabolic MRI in Prostate Cancer Patients"
agentmess/academic-kickstart
agentmess/binder-octave
An example of using Octave on mybinder.org
agentmess/Flip-Angle-Design-Toolbox
Tools for designing optimal flip angle schemes for hyperpolarized carbon-13 magnetic resonance spectroscopy
agentmess/git-tutorial-test
agentmess/hyperpolarized-mri-toolbox
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
agentmess/jupyter-intro-xfel-jan17
Introduction to Jupyter Notebook
agentmess/MRI-education-binder
agentmess/mri-simulator
MRI simulator for educational purposes written in MATLAB
agentmess/tensor-denoising-2DCSI
Contains code for tensor denoising of 2D CSI data (single-timepoint) using Tucker decomposition
agentmess/ucsf-radiology-getting-started
Getting Started Tutorial for UCSF Radiology new members for Git, Bash, MRI Physics, Server resources (hosts, python versions, ML libraries, MATLAB, VNC)
agentmess/ucsf-radiology.github
This is a special GitHub repo used to house org-wide README.md for our organization's public profile page.
agentmess/UTEMRI_Brain
Processing ultrashort echo time (UTE) MRI data in the Brain