The Read Cell Ranger operator
reads Cell Ranger output files into Tercen.
Input projection |
. |
column |
factor, documentId of the ZIP file containing Cell Ranger output files |
Input parameters |
. |
proportion |
numeric, proportion of data (barcodes) to downsample |
Output relations |
. |
count |
count |
barcode |
barcode ID |
gene_name1 |
gene ID (Ensembl) |
gene_name2 |
gene ID (Symbol) |
sample_id |
sample ID (subfolder name) |
The operator expects a ZIP file containing output files from Cell Ranger
(barcodes, features and matrix files). If multiple subfolders are found,
each of them will be read as a different sample (sample_id
column).
scRNAseq_QC_operator