/vole_genome_analysis

Material for the analysis of Microtus whole genomes

Primary LanguageR

Vole genome analysis

Description

This repository contains material for the analysis of Microtus whole genomes.

Content

Files for data preprocessing:

  • 00_compute_popgen_stats.R

  • 00_compute_RNDsp.R

  • 00_utils.R

  • 00_VCF_preprocessing.sh

Files for data analysis and visualisation:

  • 01_make_pop_history_plots.R

  • 02_make_RNDsp_plots.R

  • 03_make_GO_Enrichment_plots.R

  • 04_make_outlier_overlap_plot.R

  • 05_make_zooms_div_plot.R

Supplementary information:

  • 99_supp_correlations-dxy-pi.R