aheritas

aheritas's Stars

• Mikata-Project/ggthemr

  Themes for ggplot2.

  Language:R8823742107

• broadinstitute/gtex-pipeline

  GTEx & TOPMed data production and analysis pipelines

  Language:Python3392881175

• nextflow-io/patterns

  A curated collection of Nextflow implementation patterns

  Language:Nextflow329242072

• PGScatalog/pgsc_calc

  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

  Language:Nextflow1071118620

• stevemussmann/admixturePipeline

  A pipeline that accepts a VCF file to run through Admixture

  Language:Python5431219

• rwdavies/QUILT

  QUILT: Low coverage whole genome sequence imputation with large reference panels

  Language:R5263710

• gagneurlab/FRASER

  FRASER - Find RAre Splicing Events in RNA-seq

  Language:R3664920

• enasequence/ena-ftp-downloader

  Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.

  Language:Java317104

• lukfor/pgs-calc

  Applying polygenic scores (PGS) on imputed genotypes

  Language:Java26454

• brainstorm/tiny-bioinfomatics-data

  Super small biological datasets for unit testing

  Language:Python18204

• genepi/imputationserver-docker

  Docker Image for Michigan Imputation Server

  Language:Dockerfile1881813

• Orion1618/Odyssey

  Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data

  Language:Shell180511

• carpentries-incubator/snakemake-novice-bioinformatics

  Introduction to Snakemake for Bioinformatics

  Language:Python176609

• gagneurlab/RNAseq-ASHG

  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows

  Language:Jupyter Notebook17204

• huw-morris-lab/imputation

  Imputation steps using the Michigan or Sanger imputation server.

  132

• Sydney-Informatics-Hub/Bioinformatics

  A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

  12201

• TorkamaniLab/Genotype_Imputation_Pipeline

  Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.

  Language:FreeBasic9616

• carpentries-incubator/managing-computational-projects

  Managing Open and Reproducible Computational Projects

  Language:R8114810

• nebfield/snpQT

  Make your SNPs cute!

  Language:Nextflow73271

• Sethupathy-Lab/RNAseq_pipeline

  Language:R5213

• GenomicsDB/GenomicsDB-R

  Experimental R bindings to the native GenomicsDB library

  Language:R4252

• mctp/lopass

  Call variants from gVCF file.

  Language:Python41

• PGScatalog/pgs-harmonizer

  A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

  Language:Python4352

• amanas/docker-glimpse

  A ready to go GLIMPSE docker image.

  Language:Dockerfile3100

• umr1283/rain

  Reference-based Ancestry INference

  Language:R3140

• lukfor/pgs-calc-nf

  Nextflow pipeline to calculate polygenetic riskscores using pgs-calc

  Language:Nextflow2100

• alaincoletta/Genotype_Imputation_Pipeline

  Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.

  Language:Shell1000

• lifebit-ai/snp-imputation-nf

  Nextflow script to create the imputation

  Language:Nextflow1