ahmedmagds
Pharmacist, Bioinformatics, Molecular Epidemiology, Microbial Genomics, Phylogenetics
Children's Hospital of PhiladelphiaPhiladelphia, USA
Pinned Repositories
ahmedmagds.github.io
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
bioconda-recipes
Conda recipes for the bioconda channel.
GNUVID
Gene Novelty Unit-based Virus Identification for SARS-CoV-2
Microbial-Genomics-Journey-Workshop-2023
Microbial-Genomics-Journey-Workshop-Gabs24
Microbial-Genomics-Journey-Workshop-Sep-2023
Redcarpet
Recombination Detection using Comparative Analysis of Regional Patterns of Exact Match Targets
SARS-CoV-2-Diversity-in-California
WhatsGNU
WhatsGNU: a tool for identifying proteomic novelty
ahmedmagds's Repositories
ahmedmagds/Microbial-Genomics-Journey-Workshop-2023
ahmedmagds/WhatsGNU
WhatsGNU: a tool for identifying proteomic novelty
ahmedmagds/GNUVID
Gene Novelty Unit-based Virus Identification for SARS-CoV-2
ahmedmagds/Microbial-Genomics-Journey-Workshop-Sep-2023
ahmedmagds/Microbial-Genomics-Journey-Workshop-Gabs24
ahmedmagds/Redcarpet
Recombination Detection using Comparative Analysis of Regional Patterns of Exact Match Targets
ahmedmagds/SARS-CoV-2-Diversity-in-California
ahmedmagds/ahmedmagds.github.io
ahmedmagds/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
ahmedmagds/asap
A scalable bacterial genome assembly, annotation and analysis pipeline
ahmedmagds/bioconda-recipes
Conda recipes for the bioconda channel.
ahmedmagds/cfml-maskrc
Masks recombinant regions in an alignment based on ClonalFrameML output
ahmedmagds/dlaicourse
Notebooks for learning deep learning
ahmedmagds/github_tutorial
A hands on forking, cloning, pulling, pushing, merging tutorial.
ahmedmagds/ncov-phylodynamics
Phylodynamic estimation of nCoV incidence and prevalence
ahmedmagds/pfb2018
ahmedmagds/PFB2018-final-project
Protein evolution and annotation project
ahmedmagds/pfb2022
Programming for Biology Class @ CSHL 2022
ahmedmagds/rarefaction-curves
ahmedmagds/TreePrior-ClockRate
Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)
ahmedmagds/urban_metagenomics_tutorial
Tools for the Urban Metagenomics Tutorial by Trelify
ahmedmagds/zenodo-upload
upload big files to Zenodo using cURL, jq and bash