Given a list of species, Sequence types clonal complexes or any categories, this script will calculate shanon index, simpson index and Hill Numbers (q=1,2). It will use random samples [10,20,30,40,50,60,70,80,90,100] with and without replacement from the dataset for 100 times for each sample.
Ahmed M Moustafa, rarefaction-curves, GitHub https://github.com/ahmedmagds/rarefaction-curves