Pinned Repositories
aimed-lab.github.io
biomedical-data-science
This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB
DEMA
GeneTerrain-Web-APP
HAPPI-database
PAGER-Web-APP
Polar-Gini-Curve
This is the source code for manucript Nguyen, T.M., Jeevan, J.J., Xu, N. and Chen, J.Y., 2021. Polar Gini Curve: a technique to discover gene expression spatial patterns from single-cell RNA-seq data. Genomics, Proteomics & Bioinformatics, 19(3), pp.493-503.
ProteoLens
A visual analytic tool for multi-scale database-driven biological network data mining
SEAS
Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples
WINNER
This is the source code for manuscript: Nguyen, T. et al. Gene Prioritization in Network Biology with WINNER. The code rank the most important genes in a gene lists (seed genes) using their interactions, also expandable to non-seed (expanded) genes.
AI.MED's Repositories
aimed-lab/biomedical-data-science
This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB
aimed-lab/DEMA
aimed-lab/Polar-Gini-Curve
This is the source code for manucript Nguyen, T.M., Jeevan, J.J., Xu, N. and Chen, J.Y., 2021. Polar Gini Curve: a technique to discover gene expression spatial patterns from single-cell RNA-seq data. Genomics, Proteomics & Bioinformatics, 19(3), pp.493-503.
aimed-lab/aimed-lab.github.io
aimed-lab/gene-prioritization
Gene prioritization based on network biology tools
aimed-lab/GeneTerrain-Web-APP
aimed-lab/HAPPI-database
aimed-lab/PAGER-Web-APP
aimed-lab/ProteoLens
A visual analytic tool for multi-scale database-driven biological network data mining
aimed-lab/SEAS
Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples
aimed-lab/WINNER
This is the source code for manuscript: Nguyen, T. et al. Gene Prioritization in Network Biology with WINNER. The code rank the most important genes in a gene lists (seed genes) using their interactions, also expandable to non-seed (expanded) genes.
aimed-lab/HIP2
An online database of human plasma proteins from healthy individuals
aimed-lab/HOMER
A human organ-specific molecular electronic repository
aimed-lab/mondrian-map