ajbass

ajbass's Stars

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

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• stephens999/fiveMinuteStats

  A repo of short "vignettes" illustrating statistical concepts

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• BenLangmead/comp-genomics-class

  Code and examples for JHU Computational Genomics class

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• popgenmethods/lecture_notes

  Lecture Notes on Computational and Mathematical Population Genetics

  18419015

• StoreyLab/qvalue

  R package to estimate q-values and false discovery rate quantities.

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• igordot/msigdbr

  MSigDB gene sets for multiple organisms in a tidy data format

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• StoreyLab/biobroom

  Tidy up computational biology objects

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• StoreyLab/reading

  A collection of papers and books that Storey Lab members should read and others may find useful

  4721013

• StoreyLab/terastructure

  TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.

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• StoreyLab/edge

  R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.

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• StoreyLab/popkin

  R package to estimate kinship and FST from SNP data

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• StoreyLab/subSeq

  Subsampling of high-throughput sequencing count data

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• OchoaLab/genio

  Statistical GENetics Input/Output Functions

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• StoreyLab/lfa

  logistic factor analysis

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• ncchung/jackstraw

  Statistical Inference for Unsupervised Learning

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• StoreyLab/superSeq

  Assessing the increase in power from increasing read depth in a given RNA-Seq study

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• StoreyLab/bnpsd

  R package to model and simulate admixed populations

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• ncchung/bioinformatics

  Trends in Bioinformatics

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• shackett/simmer

  Systematic Identification of Meaningful Metabolic Enzyme Regulation

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• alexviiia/DomStratStats

  Improve protein domain predictions from HMMER3: Computes domain q-values and local FDRs, and tiered q-values (combining HMMER3 domain and sequence data).

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• ajbass/lit

  Identifying latent genetics interactions in genome-wide association studies using multiple traits

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• ncchung/svdvis

  Singular Value Decomposition Visualization

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• OchoaLab/kinshipsymbols

  LaTeX package with math symbols for statistical genetics models, particularly kinship coefficients, including options like colors and notation simplifications

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• OchoaLab/simgenphen

  Simulate Genotypes and Phenotypes (wrapper of bnpsd, simfam, and simtrait)

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• SineadMorris/TRMecology

  Mathematical analysis of tissue-resident memory T cell populations

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• SineadMorris/ushr

  Understanding suppression of HIV in R

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• alexviiia/cv

  My academic CV LaTeX source files

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• alexviiia/filer

  Handle Gzip'd Files Transparently

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• ncchung/jaws

  Jackstraw Weighted Shrinkage Methods

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• OchoaLab/template-response

  Template for response to peer review of scientific article

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