ajinkya-kulkarni/CondaEnvManagement

Anaconda Environment Setup Script

This shell script creates and installs packages in multiple Anaconda environments. It supports Linux (Ubuntu 22.10 at least) and MacOS.

Instructions

• For Linux, run the script as:

  source <path/to/script.sh>
  

• For MacOS, run the script as:

  sh <path/to/script.sh>
  

What it does

1. Removes all environments except base
2. Defines a function to create environments and install packages
3. Creates and activates each environment in a loop, and installs packages according to the environment
4. Cleans the environment and deactivates it after installation is complete

The following environments are created and the following packages are installed:

• general:

  • numpy
  • opencv-python-headless
  • imageio
  • scikit-image
  • scipy
  • matplotlib
  • tqdm
  • tifffile
  • Pillow
  • streamlit
  • protobuf
  • jupyter

• numba:

  • numpy
  • opencv-python-headless
  • imageio
  • scikit-image
  • scipy
  • matplotlib
  • tqdm
  • tifffile
  • Pillow
  • streamlit
  • protobuf
  • jupyter
  • numba

• deeplearning:

  • numpy
  • opencv-python-headless
  • imageio
  • scikit-image
  • scipy
  • matplotlib
  • tqdm
  • tifffile
  • Pillow
  • streamlit
  • protobuf
  • jupyter
  • tensorflow-cpu
  • scikit-learn
  • stardist

• pyclesperanto:

  • numpy
  • opencv-python-headless
  • imageio
  • scikit-image
  • scipy
  • matplotlib
  • tqdm
  • tifffile
  • Pillow
  • streamlit
  • protobuf
  • jupyter
  • pyclesperanto-prototype
  • pocl (if running on Linux)

• ABAproject:

  • boto3
  • botocore
  • caosdb
  • caosadvancedtools
  • jupyter