ajinkya-kulkarni

ABA-Project-Overview

CrowdDynamics

MPINAT-LSM-Application

Streamlit app for scientific data management at the Max Planck Institute for Multidisciplinary Sciences.

PyBlendPatches

Efficiently handles large images by segmenting them into patches, performing instance/semantic segmentation, and then reconstructing the patches into a complete, segmented mask.

PyElispotAnalysis

Detecting spots (IFN-Gamma positive cells) from an Elispot assay image using Deep learning

PyFlocking

Simulations of flocking behaviour in active agents, using a simple Viscek model

PyHistology

Python package that uses colorspace-based segmentation to analyze histopathology images.

PyOrganoIDNet

This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/

PySpatialHistologyAnalysis

Package using StarDist and Python that performs object detection and spatial analysis on H&E images

PyTextureAnalysis

PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degree of coherence, and structure tensor of an image. This package is built using NumPy, SciPy and OpenCV.

ajinkya-kulkarni/PyTextureAnalysis

PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degree of coherence, and structure tensor of an image. This package is built using NumPy, SciPy and OpenCV.

ajinkya-kulkarni/PyHistology

Python package that uses colorspace-based segmentation to analyze histopathology images.

ajinkya-kulkarni/MPINAT-LSM-Application

Streamlit app for scientific data management at the Max Planck Institute for Multidisciplinary Sciences.

ajinkya-kulkarni/PyFlocking

Simulations of flocking behaviour in active agents, using a simple Viscek model

ajinkya-kulkarni/PyBlendPatches

Efficiently handles large images by segmenting them into patches, performing instance/semantic segmentation, and then reconstructing the patches into a complete, segmented mask.

ajinkya-kulkarni/PyOrganoIDNet

This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/

ajinkya-kulkarni/PySpatialHistologyAnalysis

Package using StarDist and Python that performs object detection and spatial analysis on H&E images

ajinkya-kulkarni/PyElispotAnalysis

Detecting spots (IFN-Gamma positive cells) from an Elispot assay image using Deep learning

ajinkya-kulkarni/ABA-Project-Overview

ajinkya-kulkarni/ajinkya-kulkarni

Config files for my GitHub profile.

ajinkya-kulkarni/CondaEnvManagement

ajinkya-kulkarni/cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

ajinkya-kulkarni/cerberus

One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification

ajinkya-kulkarni/cleanvision

Automatically find issues in image datasets and practice data-centric computer vision.

ajinkya-kulkarni/ElispotStreamlitApp

ajinkya-kulkarni/EmbedSeg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

ajinkya-kulkarni/iguana

Interpretable Gland-Graph Networks

ajinkya-kulkarni/ImageSegmentor

ajinkya-kulkarni/LIVECell

ajinkya-kulkarni/MEDIAR

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

ajinkya-kulkarni/micro-sam

Segment Anything for Microscopy

ajinkya-kulkarni/neurips22-cellseg_saltfish

ajinkya-kulkarni/PyComplexHeatmap

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

ajinkya-kulkarni/PyDetectOrganoids

ajinkya-kulkarni/quantixed

My GitHub profile

ajinkya-kulkarni/segmentation_metrics

A package to compute medical segmentation metrics.

ajinkya-kulkarni/spotiflow

Accurate and efficient spot detection for microscopy data

ajinkya-kulkarni/stardist

StarDist - Object Detection with Star-convex Shapes

ajinkya-kulkarni/Temp

ajinkya-kulkarni/visa_rescheduler

US VISA (ais.usvisa-info.com) appointment re-scheduler - Colombian adaptation