akashkumar0001

akashkumar0001's Stars

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL20798

• nf-core/variantcatalogue

  Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.

  Language:Nextflow94

• sanger-tol/variantcalling

  Nextflow DSL2 pipeline to call variants on long read alignment.

  Language:Nextflow43

• peterk87/nf-illmap

  Nextflow workflow for Illumina read mapping, variant calling and consensus sequence generation using Snippy

  Language:Nextflow31

• nf-core/ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  Language:Nextflow189124

• CompEpigen/wf_WGS

  Nextflow workflow to process WGS data

  Language:Python4

• NBISweden/K9-WGS-Pipeline

  Nextflow pipeline for standardised variant calls on canine genomes

  Language:Shell55

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python23623

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k731

• datablist/sample-csv-files

  Language:Python10228

• bw2/Pangolin

  Pangolin is a deep-learning method for predicting splice site strengths.

  Language:Python1

• bw2/SpliceAI

  A deep learning-based tool to identify splice variants

  Language:Python4

• freeseek/mochawdl

  MoChA WDL pipelines

  Language:WDL95

• freeseek/gtc2vcf

  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF

  Language:C14424

• freeseek/score

  Tools to work with GWAS-VCF summary statistics files

  Language:C1107

• carpentries-incubator/workflows-nextflow

  Workflow management with Nextflow and nf-core

  Language:Nextflow2534

• nf-core/test-datasets

  Test data to be used for automated testing with the nf-core pipelines

  109361

• nf-core/website

  Code and files for the main nf-core website.

  Language:MDX70194

• nf-core/tools

  Python package with helper tools for the nf-core community.

  Language:Python246192

• harvardinformatics/learning-bioinformatics-at-home

  resources for learning bioinformatics

  853155

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k619

• digo4/Clinical-Genomics

  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

  Language:Shell3911

• SvetlanaUP/A-microbiologist-wants-to-compute

  This repo collects the list of learning online resources related to microbiome computational science and tools.

  7912

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook46172

• BioinformaNicks/Bioinformatics-training-collection

  A collection of resources for learning about tools and programming languages related to Bioinformatics

  15722

• kpatel427/YouTubeTutorials

  Language:R298131

• Bioconductor/bioconductor-training

  Bioconductor teaching and education committee

  Language:HTML4325

• gatk-workflows/seq-format-conversion

  Workflows for converting between sequence data formats

  Language:wdl3729

• Sentieon/sentieon-dnaseq

  Sentieon DNAseq

  Language:Shell2213

• Sentieon/sentieon-google-genomics

  Run Sentieon pipelines on Google Cloud Platform

  Language:Shell67