akhanf's Stars
OpenInterpreter/open-interpreter
A natural language interface for computers
dpath-maintainers/dpath-python
A python library for accessing and searching dictionaries via /slashed/paths ala xpath.
daniilidis-group/spherical-cnn
Demo code for the paper "Learning SO(3) Equivariant Representations with Spherical CNNs"
BlueBrain/Brayns
Visualizer for large-scale and interactive ray-tracing of neurons
dask/dask-image
Distributed image processing
brainglobe/cellfinder
Automated 3D cell detection in very large images
jdblischak/smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
haesleinhuepf/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
hms-dbmi/vizarr
A minimal Zarr image viewer based on Viv.
Shape-Lab/SPHARM-Net
SPHARM-Net: Spherical Harmonics-based Convolutional Neural Network
wwu-mmll/photonai
PHOTONAI is a high level python API for designing and optimizing machine learning pipelines.
peng-lab/BaSiCPy
wiheto/netplotbrain
A package to create simple 3D network visualizations on a brain.
khanlab/hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
RUB-Bioinf/VesselExpress
🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
AICONSlab/MIRACL
Multi-modal Image Registration And Connectivity anaLysis
twmitchel/MobiusConv
Official PyTorch implementation of Möbius Convolutions for Spherical CNNs [SIGGRAPH 2022].
manzt/simple-zarr-server
serve Zarr datasets via HTTP
PolusAI/nyxus
A fully scalable robust image feature extraction library.
twmitchel/TS2Kit
Differentiable Spherical Harmonic Transforms in PyTorch
nipreps/eddymotion
Open-source eddy-current and head-motion correction for dMRI.
TheJacksonLaboratory/dask_relabeling
A relabeling tool for tiled segmentation with Dask
CCI-Bonn/HD-MS-Lesions
Automated deep learning based segmentation of multiple sclerosis lesions on MRI
int-brain-lab/atlas
Brain flatmaps generation
khanlab/scattr
BIDS app for structural connectivity between targeted regions
0rC0/WMHpypes
Code for: Gaubert, M., Dell’Orco, A., Lange, C., Garnier-Crussard, A., Zimmermann, I., Dyrba, M., ... & Max, K. (2023). Performance evaluation of automated white matter hyperintensity segmentation algorithms in a multicenter cohort on cognitive impairment and dementia. Frontiers in psychiatry, 13, 1010273.
Euro-BioImaging/ZarrSeg
Command line tool to segment local and remote OME-Zarr data
HumanBrainProject/neuroglancer-docker
Dockerized web server for Neuroglancer and pre-computed images
khanlab/SPIMprep
A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)
khanlab/zarrnii
Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations