akiledal

akiledal's Stars

• facebook/docusaurus

  Easy to maintain open source documentation websites.

  Language:TypeScript55.9k4073.1k8.4k

• sobolevn/git-secret

  :busts_in_silhouette: A bash-tool to store your private data inside a git repository.

  Language:Shell3.7k37500199

• Zer0-bit/gaggiuino

  A Gaggia Classic control project using microcontrollers.

  1.9k9927264

• thomasp85/scico

  Palettes for R based on the Scientific Colour-Maps

  Language:R41181424

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl3642919990

• nextgenusfs/funannotate

  Eukaryotic Genome Annotation Pipeline

  Language:Python320161k85

• bioFAM/MOFA2

  Multi-Omics Factor Analysis

  Language:R3001413652

• antismash/antismash

  antiSMASH

  Language:Python1841426364

• cruizperez/MicrobeAnnotator

  Pipeline for metabolic annotation of microbial genomes

  Language:Python13988427

• linnabrown/run_dbcan

  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

  Language:Python138615540

• pha4ge/hAMRonization

  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

  Language:Python138185527

• steineggerlab/foldmason

  Multiple Protein Structure Alignment at Scale with FoldMason

  Language:C11551010

• gaborcsardi/secret

  :closed_lock_with_key: Secure sharing of sensitive information in R packages

  Language:R10243516

• cmkobel/CompareM2

  🦠📇 Microbial genomes-to-report pipeline

  Language:Python523973

• EBI-Metagenomics/mettannotator

  Language:Python51645

• allind/EukDetect

  Language:Python4344916

• NBChub/bgcflow

  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

  Language:Python3032058

• AlexanderLabWHOI/EUKulele

  Automatic eukaryotic taxonomic classification

  Language:Python285527

• raberrio/gaggia_coffee_controller

  This is my personal approach to make a controller for Gaggia Classic coffee machine. I have designed it from scratch integrating standard parts that can be found online. It main goal is to control boiler temperature and pump pressure, but actually i am adding more features as i have the time to implement it.

  Language:C++28728

• AlexanderLabWHOI/EukHeist

  Language:Jupyter Notebook23315

• arumugamlab/MIntO

  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

  Language:Python1410

• EBI-Metagenomics/kegg-pathways-completeness-tool

  Language:Python14723

• AroneyS/binchicken

  Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

  Language:Python13370

• Tropini-lab/PUPpy

  Pipeline to design taxon-specific primes in defined bacterial communities.

  Language:Python132124

• franciscozorrilla/EMBOMicroCom

  Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022

  Language:R10111

• neracoos-open/MBON_DMAC

  This is the central hub to facilitate data management and archiving workflows for the NERACOOS portion of the Marine Biodiversity Observation Network (MBON) project.

  Language:Python5410

• pvanheus/lukasa

  Language:Common Workflow Language4211

• NBChub/bgcflow_dbt-duckdb

  An ELT framework based on DBT and DuckDB to process BGCFlow output tables

  Language:Shell2241

• NBChub/snakemake-UmetaFlow

  Created for testing the metabolomics pipeline through snakemake

  Language:Python23120

• NOAA-GIS4Ocean/H3_indicators

  Notebooks and documentation about computing H3 biodiversity indicators

  Language:Jupyter Notebook21