akira-endo
Infectious disease modeller at National University of Singapore and Nagasaki University
London School of Hygiene & Tropical Medicine
Pinned Repositories
2019nCoV
analysis of 2019-nCoV outbreak
adventofcode2021
Advent of Code 2021
COVID19_backwardtracing
Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
COVID19_clustersize
Analysis of COVID-19 transmission using cluster size distribution
HHstudy_FluMatsumoto2014-15
Household study on influenza outbreak in primary schools in Matsumoto city, Japan, 2014-15
idmodelr
Infectious disease model library and utilities
Intro-PMCMC
Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
juliasandbox
Sandbox for Julia programming
jupyter_docker_codespaces_template
A repository template for Jupyter Lab + Docker + Codespaces
monkeypox_heavytail
Underlying code for Endo et al. "Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions, May 2022."
akira-endo's Repositories
akira-endo/COVID19_clustersize
Analysis of COVID-19 transmission using cluster size distribution
akira-endo/Intro-PMCMC
Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
akira-endo/COVID19_backwardtracing
Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
akira-endo/monkeypox_heavytail
Underlying code for Endo et al. "Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions, May 2022."
akira-endo/HHstudy_FluMatsumoto2014-15
Household study on influenza outbreak in primary schools in Matsumoto city, Japan, 2014-15
akira-endo/adventofcode2021
Advent of Code 2021
akira-endo/2019nCoV
analysis of 2019-nCoV outbreak
akira-endo/idmodelr
Infectious disease model library and utilities
akira-endo/juliasandbox
Sandbox for Julia programming
akira-endo/jupyter_docker_codespaces_template
A repository template for Jupyter Lab + Docker + Codespaces
akira-endo/akira-endo.github.io
Akira Endo, MD
akira-endo/cmmid.github.io
akira-endo/epiforecasts-distill
Distill website for EpiForecasts (beta)
akira-endo/EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
akira-endo/mathepidrill
Quick training set for mathematical epidemiology (infectious disease modeling)
akira-endo/mpox_emergenceJapan
akira-endo/mpoxlinelist_JPN
Mpox cases linelist in Japan
akira-endo/reanalysis_Fukumoto2021
Reanalysis of Fukumoto et al. (2021)
akira-endo/reanalysis_Yokota2020
Reanalysis of PCR sensitivity estimation in Yokota et al. (2020)
akira-endo/rocker_codespaces_template
Template for rocker integrated with codespaces
akira-endo/schooldynamics_FluMatsumoto14-15
Transmission patterns of seasonal influenza and pandemic management strategies
akira-endo/SoftwareChatter
Software engineering discussion group resources
akira-endo/TND-biascorrection
Bias correction methods for test-negative design in the presence of misclassification
akira-endo/us-mpx
Tracking Monkeypox Virus (MPX) infections reported in the United States