/reanalysis_Yokota2020

Reanalysis of PCR sensitivity estimation in Yokota et al. (2020)

Primary LanguageHTMLMIT LicenseMIT

Reanalysis of PCR sensitivity estimation in Yokota et al. (2020)

Source code accompanying a Letter to the Editor: correspondence to Yokota et al. "Mass screening of asymptomatic persons for SARS-CoV-2 using saliva". https://academic.oup.com/cid/advance-article/doi/10.1093/cid/ciaa1388/5911780

The letter has been accepted for publication in Clinical Infectious Diseases Published by Oxford University Press (doi:10.1093/cid/ciaa1656).

Main files

  • reanalysis_Yokota2020.ipynb/.html: Jupyter Notebook reanalysing Yokota et al.
  • Letter_to_the_Editor.pdf: Manuscript PDF.

Licence

MIT

Dependencies

  • Julia ver. 1.2.0
  • Distributions.jl ver. 0.21.2
  • Mamba.jl ver. 0.12.2
  • Plots.jl ver. 0.27.0
  • RCall.jl ver. 0.13.4
  • R ver. 3.6.1
  • {synchrony} ver. 0.3.8
  • IJulia.jl ver. 1.20.0
  • Python ver. 3.7.4
  • Jupyter Notebook ver. 4.5.0

Authors

Akira Endo