akoontz11
Research Consultant @HobanLab. Conservation, plant population genomics, and bike touring.
The Morton ArboretumEugene, Oregon
Pinned Repositories
2023-unixbasics
Based off of ConGen 2021 workshop; edits mostly made to README files, to make instructions relevant to lab exercise
akoontz11
Config files for my GitHub profile.
akoontz11.github.io
Repository for personal website, using blogdown
conservation-gap-analysis
Conservation gap analysis workflow
natdb
Not a Trait Database
OTU_Phylogeny
OTU threshold analysis pipeline using phylogenetic transformations
Primula
Scripts and parameter files used for Koontz et al. 2022, analysis of the Primula cusickiana species complex
RHF_Microbial
Scripts used to run QIIME2 on RHF microbial sequences, and R analysis scripts for QIIME2 output
Morton_SSRvSNP_Empirical
Generation of RADseq markers for 2 rare Quercus spp., and how ex situ conservation measures with these markers compare to those generated with microsatellites
SymbiotaR2
SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals
akoontz11's Repositories
akoontz11/RHF_Microbial
Scripts used to run QIIME2 on RHF microbial sequences, and R analysis scripts for QIIME2 output
akoontz11/2023-unixbasics
Based off of ConGen 2021 workshop; edits mostly made to README files, to make instructions relevant to lab exercise
akoontz11/akoontz11
Config files for my GitHub profile.
akoontz11/akoontz11.github.io
Repository for personal website, using blogdown
akoontz11/conservation-gap-analysis
Conservation gap analysis workflow
akoontz11/natdb
Not a Trait Database
akoontz11/OTU_Phylogeny
OTU threshold analysis pipeline using phylogenetic transformations
akoontz11/Primula
Scripts and parameter files used for Koontz et al. 2022, analysis of the Primula cusickiana species complex
akoontz11/Tyrell
COVID-19 seasonal data/model/forecast toolkit