akoontz11

akoontz11's Stars

• JuliaLang/julia

  The Julia Programming Language

  Language:Julia46.1k93024.5k5.5k

• CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

  aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

  Language:Jupyter Notebook26.9k1.4k2457.9k

• onceupon/Bash-Oneliner

  A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

  10.3k11214630

• gedeck/practical-statistics-for-data-scientists

  Code repository for O'Reilly book

  Language:Jupyter Notebook2.8k71261.8k

• mavam/stat-cookbook

  :orange_book: The probability and statistics cookbook

  Language:TeX2.3k15311342

• seeingtheory/Seeing-Theory

  A visual introduction to probability and statistics.

  Language:HTML1.9k8637307

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.6k107309555

• ncbi/sra-tools

  SRA Tools

  Language:C1.2k56864250

• tirthajyoti/Stats-Maths-with-Python

  General statistics, mathematical programming, and numerical/scientific computing scripts and notebooks in Python

  Language:Jupyter Notebook900394377

• unpingco/Python-for-Probability-Statistics-and-Machine-Learning

  Jupyter Notebooks for Springer book "Python for Probability, Statistics, and Machine Learning"

  Language:Jupyter Notebook750392296

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++74128844275

• shervinea/stanford-cme-106-probability-and-statistics

  VIP cheatsheets for Stanford's CME 106 Probability and Statistics for Engineers

  682243219

• hrnbot/Basic-Mathematics-for-Machine-Learning

  The motive behind Creating this repo is to feel the fear of mathematics and do what ever you want to do in Machine Learning , Deep Learning and other fields of AI

  Language:Jupyter Notebook673301196

• mmatschiner/tutorials

  Tutorials on phylogenetic and phylogenomic inference

  Language:HTML3681718171

• ISUgenomics/bioinformatics-workbook

  Bioinformatics Workbook repository

  Language:HTML17717890

• MesserLab/SLiM

  SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

  Language:C++1691632334

• JuliaPhylo/PhyloNetworks.jl

  PhyloNetworks: a julia package with utilities for phylogenetic networks

  Language:Julia158179449

• applied-bioinformatics/iab2

  An Introduction to Applied Bioinformatics, 2nd Edition

  Language:TeX1313515

• popsim-consortium/stdpopsim

  A library of standard population genetic models

  Language:Python1261469890

• clairemerot/angsd_pipeline

  Language:Shell26309

• kkeenan02/diveRsity

  diveRsity: A comprehensive, general purpose population genetics analysis package.

  Language:R236122

• melisaolave/SNPs2CF

  An R function to compute Concordance Factors from SNP datasets

  Language:R13181

• kr-colab/mapNN

  neural network for estimating demographic maps from SNPs

  Language:Python9431

• Tom-Jenkins/nextflow-pipelines

  Scripts for bioinformatics analysis of sequencing data

  Language:Nextflow8201

• cjbattey/LinckBattey2017_MAF_clustering

  R scripts used in "Minor allele frequency thresholds strongly affect population structure inference with genomic datasets" (Linck & Battey 2017, doi: https://doi.org/10.1101/188623)

  Language:R6100

• CCGenetics/guidelines-genetic-diversity-indicators

  Guideline materials and documentation for the assessment of species genetic diversity using genetic diversity indicators

  Language:Ruby5100

• stevenpbachman/LCRapid

  Quickly determine if a plant species is likely to be non-threatened (Least Concern - See IUCN Red List) and generate minimal documentation for a Least Concern species IUCN Red List submission via https://connect.iucnredlist.org/ (registration needed)

  Language:R3401

• NCGRP/haplotypista

  haplotypista generates new allele calls for genomewide SNP data by concatenating adjacent SNPs

  Language:C++2100

• GenTree-h2020-eu/GenTree

  GenTree project (https://www.gentree-h2020.eu/) bioinformatic and analytical code

  Language:Jupyter Notebook1001

• wessingerlab/wessingerlab.github.io

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