JuliaPhylo/PhyloNetworks.jl

Issues

• TagBot trigger issue

  #157 opened 4 years ago by JuliaTagBot
  15

• Impossible to access to the tutorial

  #216 opened 3 months ago by pgarciamoro
  1

• Create Dev branch in PhyloNetworks

  #214 opened 5 months ago by jjustison
  4

• 2-cycle (parallel edges) proposed in SNaQ

  #210 opened 6 months ago by cecileane
  1

• infinite loop in `readTopologyLevel1`

  #201 opened a year ago by NathanKolbow
  8

• MrBayer error

  #208 opened 10 months ago by tsm-tsm
  3

• fitdiscrete error with new String7 from CSV

  #205 opened a year ago by crsl4
  1

• Feedback on Detected EXCEPTION-HANDLING

  #203 opened a year ago by zyue110026
  0

• The confusion of starting topology

  #204 opened a year ago by zhangwenda0518
  1

• Inheritance Probability Confidence Interval?

  #198 opened 2 years ago by bfauskee
  2

• Support extended Newick?

  #193 opened 2 years ago by cossio
  7

• Get rid of `TableRegressionModel`

  #185 opened 2 years ago by nalimilan
  1

• Ghost introgression

  #192 opened 2 years ago by JohnsonStev
  4

• standardize getter names?

  #80 opened 2 years ago by cecileane
  10

• bootsnaq parallelization error

  #191 opened 2 years ago by crsl4
  0

• performance suggestion make trees more type stable

  #155 opened 2 years ago by oscardssmith
  5

• multiple alleles: bug in mapAllelesCFtable?

  #143 opened 2 years ago by cecileane
  3

• Network with undefined branches makes phylolm fail

  #179 opened 2 years ago by pbastide
  2

• readTopology with negative edge lengths

  #176 opened 2 years ago by fogg-uw
  0

• Speed of `readMultiTopology` compared to `map` and `fmap` with large amount of trees

  #170 opened 3 years ago by gaballench
  3

• deleteleaf method bug

  #153 opened 3 years ago by zyzvnnb
  3

• PhyloNetworks prevents BioSequences package upgrade

  #168 opened 3 years ago by fpmenninger
  1

• Minor doc typo

  #166 opened 3 years ago by crsl4
  1

• Lambda models with individual variation

  #162 opened 3 years ago by claireh93
  1

• using phylolm() with multiple records / individuals

  #101 opened 4 years ago by richardreeve
  5

• Cannot precompile PhyloPlots

  #141 opened 4 years ago by eckofoid
  1

• error during SNaQ score calculation: "strange qnet", "Bad Diamond I" and "qnet should have only one of the gammaz"

  #158 opened 4 years ago by cecileane
  0

• hybridBootstrapSupport error

  #154 opened 4 years ago by smallfishcui
  13

• equal rates model fitdiscrete bug

  #147 opened 4 years ago by coraallensavietta
  1

• major re-write on snaq check root

  #136 opened 4 years ago by crsl4
  2

• writeTopologyLevel1 changes the network when printID=true

  #138 opened 4 years ago by crsl4
  2

• quartet network with incorrect fields

  #95 opened 6 years ago by cecileane
  17

• write/plot bug when root at leaf

  #129 opened 4 years ago by crsl4
  6

• How to use snp to do phylogenetic networks analysis using PhyloNetworks.jl?

  #130 opened 4 years ago by xiekunwhy
  1

• multiple alleles: within-species alleles not monophyletic

  #126 opened 4 years ago by crsl4
  3

• minor typo in documentation

  #125 opened 4 years ago by crsl4
  2

• wrong warning readTableCF

  #120 opened 4 years ago by crsl4
  3

• readTrees2CF does not work

  #118 opened 5 years ago by migerschw
  2

• bootstrap step is too slow

  #116 opened 5 years ago by tangerzhang
  0

• Reroot conflicts

  #112 opened 5 years ago by tangerzhang
  2

• strange behavior of plot/writeTopology after deleteLeaf!

  #84 opened 5 years ago by crsl4
  3

• error in hybridlambdaformat

  #113 opened 5 years ago by crsl4
  8

• Problem when analyzing choice of h

  #111 opened 5 years ago by tangerzhang
  2

• running snaq kills julia

  #99 opened 5 years ago by sandrahoffberg
  1

• erratic behavior of readTopology with internal node names

  #85 opened 5 years ago by crsl4
  2

• PhyloNetworks with ancient gene flow

  #96 opened 5 years ago by yongzhiyang2012
  0

• readTopology failing with BL=E-16

  #87 opened 6 years ago by crsl4
  1

• type of argument in calibrate function

  #97 opened 6 years ago by crsl4
  2

• error with Julia v1.0

  #83 opened 6 years ago
  6

• Gene too short for RAxML + Astral analysis?

  #78 opened 6 years ago by marybelsoto
  3