cecileane
currently focused on developing methods for studying evolution along phylogenetic networks. See JuliaPhylo: https://github.com/JuliaPhylo/
University of Wisconsin - MadisonMadison, WI, USA
Pinned Repositories
computingtools
course website: computing tools for data analytics
iBPP
Bayesian species delimitation integrating genes and traits
networkPCM-workshop
workshop on phylogenetic comparative methods on networks, July 2023
simulation-ratevariation
Simulations of gene trees with rate variation
WGDgc
analysis of whole genome duplications (WGD) and triplications (WGT) using comparative gene count data
PhyloCoalSimulations.jl
PhyloNetworks.jl
PhyloNetworks: a julia package with utilities for phylogenetic networks
l1ou
Detection of evolutionary shifts in Ornstein-Uhlenbeck models
phylolm
cecileane's Repositories
cecileane/iBPP
Bayesian species delimitation integrating genes and traits
cecileane/computingtools
course website: computing tools for data analytics
cecileane/WGDgc
analysis of whole genome duplications (WGD) and triplications (WGT) using comparative gene count data
cecileane/networkPCM-workshop
workshop on phylogenetic comparative methods on networks, July 2023
cecileane/simulation-ratevariation
Simulations of gene trees with rate variation
cecileane/HybridLambdaBuilder
cecileane/S_alata_Microdistribution
cecileane/AlgebraOfGraphics.jl
Combine ingredients for a plot
cecileane/ane-group-guidelines-expectations
cecileane/cecileane.github.io
personal github website
cecileane/Discovery-Hiring-Analyst-2016
Task description and data for candidates applying to be a Data Analyst in the Discovery department at Wikimedia Foundation.
cecileane/Documenter.jl
A documentation generator for Julia.
cecileane/General
The official registry of general Julia packages
cecileane/github-classroom-for-teachers
cecileane/hybrid-Lambda
Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.
cecileane/l1ou
Detection of evolutionary shifts in Ornstein-Uhlenbeck models
cecileane/mass_clone
This is a shell script that will clone multiple repositories. The intended usage is for GitHub Classroom to be able to clone all repos of a certain assignment. The script will create a folder based on the identifier(assignment name) then make folders for each repo then clone. Uses GitHub api v3, curl 7.49.1 and grep 2.5.1
cecileane/METADATA.jl
Metadata for registered Julia packages.
cecileane/MetaGraphsNext.jl
A package for graphs with vertex labels and metadata in Julia
cecileane/phylolm
cecileane/SimplexGraphs
R code to draw simplex graphs
cecileane/simulation-anomalous-4taxnet-prevalence
Simulation to quantify the prevalence of anomalous 4-taxon networks
cecileane/Test-for-SNAQ-by-Reduced-Data-Sample
Basic use and test of software SNAQ! applying to the reduced genetic trees data sample.
cecileane/TICR
pipeline for highly parallelized concordance analyses on very long alignments, and TICR test
cecileane/traitevoOUshift
research project with Sabrina
cecileane/Trees.jl
example Julia package
cecileane/UW-SGSA-Website
The official repository for the UW SGSA website:
cecileane/wgd-analysis
cecileane/zmays-snps
SNP calling project in Zea Mays