popsim-consortium/stdpopsim

Issues

• beware of recapitation and missing data

  #1584 opened 2 months ago by petrelharp
  1

• include parameter values in catalogue for DFEs

  #1509 opened 3 months ago by petrelharp
  0

• bug in adding mutations to the recapitated portion of the tree sequence

  #1496 opened a year ago by mufernando
  4

• revisit ExtendedEvents docs

  #1573 opened 4 months ago by petrelharp
  0

• should post-SLiM simplify have `keep_input_roots=True`?

  #1579 opened 3 months ago by petrelharp
  9

• Document what sort of intervals `contig.add_dfe` expects

  #1580 opened 3 months ago by nspope
  0

• add test that nothing is simulated outside of `left-right` on both msprime and slim

  #1577 opened 4 months ago by petrelharp
  0

• Release 0.2.1 checklist

  #1565 opened 4 months ago by andrewkern
  3

• QC for new DFE: "generic" human DFE

  #1507 opened a year ago by chriscrsmith
  0

• Add per-chromosome ploidy checks to test stubs in maintenance scripts

  #1467 opened 2 years ago by nspope
  1

• QC for LogNormalDFE (HomSap)

  #1484 opened a year ago by RyanGutenkunst
  0

• SLiM Support in Windows

  #1563 opened 5 months ago by daikitag
  3

• allow users to enable SLiM on Windows if they Really Want To

  #1576 opened 4 months ago by petrelharp
  1

• QC for DomesticusEurope_1F22, MusculusKorea_1F22, and CastaneusIndia_1F22 (MusMus)

  #1528 opened 4 months ago by igronau
  2

• Restarting simulations in SLiM engine (community.allScriptBlocks.active property)

  #1558 opened 4 months ago by jmurga
  3

• time units mismatch warning

  #1549 opened 4 months ago by petrelharp
  1

• numpy v2 and requirements.txt

  #1566 opened 4 months ago by petrelharp
  1

• macos runners >12 won't support conda

  #1568 opened 4 months ago by nspope
  0

• Pandas warning: Calling int on a single element Series is deprecated and will raise a TypeError

  #1493 opened 4 months ago by hyanwong
  1

• What to do about shifting ensembl build?

  #1521 opened a year ago by petrelharp
  11

• orangutan model how to add adaptive introgression?

  #1554 opened 8 months ago by h-pawar
  1

• cached files need python version information in filenames

  #1551 opened 4 months ago by petrelharp
  15

• Deprecated pandas operation (`Calling int on a single element Series`)

  #1544 opened 4 months ago by daikitag
  2

• add fox?

  #1504 opened 4 months ago by petrelharp
  4

• Typo in documentation?

  #1562 opened 5 months ago by jiseonmin
  3

• QC for DFE model Gamma_R22 for Vaquita (PhoSin)

  #1548 opened 6 months ago by igronau
  9

• add vaquita

  #1508 opened 6 months ago by petrelharp
  10

• document QC procedure for DFEs

  #1557 opened 7 months ago by petrelharp
  0

• DFE for MusMus

  #1555 opened 8 months ago by peterdfields
  10

• error in logging from SLiM engine

  #1545 opened 7 months ago by petrelharp
  0

• change to pip install in dev docs

  #1552 opened 8 months ago by petrelharp
  0

• Mutation model

  #1546 opened 9 months ago by daikitag
  1

• Add detail about SLiM install to installation docs

  #1541 opened a year ago by hyanwong
  2

• document how to simulate from one species' DFE with another species

  #1495 opened a year ago by petrelharp
  1

• remove python 3.7 from CI?

  #1499 opened a year ago by petrelharp
  2

• QC for Vaquita2Epoch_1R22 (PhoSin)

  #1530 opened a year ago by igronau
  1

• QC for Vaquita

  #1525 opened a year ago by igronau
  1

• Fix CI

  #1529 opened a year ago by petrelharp
  5

• Inconsistent factors of 2 in human gamma DFE models?

  #1477 opened a year ago by RyanGutenkunst
  4

• add 'best' DFE from Kyriazis et al

  #1494 opened a year ago by petrelharp
  4

• failing tests

  #1523 opened a year ago by petrelharp
  2

• QC for BottleneckMigration_3C07 (OrySat)

  #1459 opened a year ago by nspope
  18

• Error on import: ModuleNotFoundError: No module named 'scipy

  #1515 opened a year ago by gregorgorjanc
  4

• test that requirements in `setup.cfg` are sufficient

  #1518 opened a year ago by petrelharp
  0

• add discretized h-s relationship DFE

  #1488 opened a year ago by petrelharp
  4

• add `uniform` DFE

  #1481 opened a year ago by petrelharp
  0

• Ancient Europe demographic model

  #1500 opened a year ago by apragsdale
  2

• add lognormal (or at least not gamma) DFE for humans

  #1470 opened a year ago by petrelharp
  8

• Wrong human population size?

  #1471 opened a year ago by regevs
  9

• add beneficial-containing DFE

  #1469 opened 2 years ago by petrelharp
  2