Pinned Repositories
bagels
open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:
bio399
Bio399- Computational Genetics
biol610
intro to programming for IE2 evolution students
pdf2pdf
does the magical pdf-to-pdf conversion popular in academic journal submission sites and does it faster than they do
popGenMachineLearningExamples
simple examples of using supervised machine learning for population genetics inference
diploSHIC
feature-based deep learning for the identification of selective sweeps
discoal
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
locator
deep learning prediction of geographic location from individual genome sequences
ReLERNN
Recombination Landscape Estimation using Recurrent Neural Networks
stdpopsim
A library of standard population genetic models
andrewkern's Repositories
andrewkern/bagels
open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:
andrewkern/biol610
intro to programming for IE2 evolution students
andrewkern/bio399
Bio399- Computational Genetics
andrewkern/slim_magic
ipython magic for simulation using SLiM
andrewkern/evomics
andrewkern/octo_snakemake
workflow for hifiasm assembly stuff
andrewkern/adding-species-manuscript
manuscript materials for the adding species paper
andrewkern/analysis2
Analysis for the second consortium paper.
andrewkern/analysis2_manuscript
manuscript repo for the paper describing selection additions and analysis
andrewkern/dadi-cli
A command line interface for dadi
andrewkern/demes-c
C library for parsing Demes demographic models
andrewkern/disperseNN2
estimating dispersal distance from georeferenced polymorphisms
andrewkern/gcn
andrewkern/hyphy
HyPhy: Hypothesis testing using Phylogenies
andrewkern/limix
Linear mixed model for genomic analyses.
andrewkern/locator
deep learning prediction of geographic location from individual genome sequences
andrewkern/machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
andrewkern/mkTest
McDonald-Kreitman test written in Ruby
andrewkern/moments
andrewkern/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
andrewkern/msprime-1.0-paper
Publication describing msprime 1.0
andrewkern/numpy_pbwt
andrewkern/phd_dissertation_murillo
andrewkern/popgensbi_snakemake
Snakemake workflow for popgensbi
andrewkern/pyslim
Tools for dealing with tree sequences coming to and from SLiM.
andrewkern/rtd-tutorial
test out rtd template
andrewkern/SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
andrewkern/stdpopsim
A library of standard simulation models for msprime
andrewkern/sweetPotatoPie
Gail Garlick's Sweet Potato Pie Recipe
andrewkern/workshops
A collection of workshop material