akrinos
Postdoc; PhD from MIT-WHOI Joint Program in Biological Oceanography; learning more about [aquatic microbial] ecology, modeling, coding/computing, global change
MIT
Pinned Repositories
2021-Homework1b-Python
Arianna's try for Homework 1b
2021-phyto-phys
A repository and readthedocs for the Fall 2021 course in Marine Phytoplankton Physiology led by Prof. Mick Follows and co-organized by Arianna Krinos.
2022-Krinos-eukrhythmic
Code and data repository for 2022 eukrhythmic manuscript.
2023-env-bioinformatics-snakemake
Repository for the Snakemake lectures of the Fall 2023 Environmental Bioinformatics course.
2023-euk-diversity
Clean version of repo for 2023 "euk-diversity" paper on taxonomic annotation of meta-omic sequences
2023-Homework1a-Python
2023-Krinos-Mendota18S
Code and associated figures for 2022 paper on Mendota 18S sequences.
2023-math-review-R
R exercises for the WHOI summer math review in 2023.
adventofcode
tax-aliquots
Taxonomic annotation tool using a two-tier approach.
akrinos's Repositories
akrinos/akrinostest
akrinos/alembic
⚗️ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website
akrinos/alembic-netlifycms-kit
akrinos/alevin-output-
Forum for sharing alevin log files
akrinos/CMDA3634SP18Arianna
SP18 repo
akrinos/django-kong
A server description and deployment testing tool for King Kong sized sites
akrinos/GEMT
Graple Experiment Management Tools
akrinos/GLMr
R package for basic GLM model running
akrinos/GRAPLEr
R API for accessing GRAPLE WEB service.
akrinos/GWS
Graple Web Service
akrinos/hugo-coder
A minimalist blog theme for hugo.
akrinos/markdown-content
Markdown content for the www.aerobatic.io website
akrinos/SBML2LaTeX
SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of SBML2LATEX is to provide a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication.