Pinned Repositories
2020-08-17-ucmerced
Carpentry workshop for GROW
2020-12-07-txstate-online
DC Carpentry workshop organized by Texas Digital Libraries (archived)
akshayparopkari
My GitHub profile
akshayparopkari.github.io
My personal webpage
BiasAway
BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.
cut_run_analysis
An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.
discover_tfbs
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
kadambari
A collection of scripts.
RNAseq
Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data
phylotoast
Tools for phylogenetic data analysis including visualization and cluster-computing support.
akshayparopkari's Repositories
akshayparopkari/RNAseq
Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data
akshayparopkari/2020-12-07-txstate-online
DC Carpentry workshop organized by Texas Digital Libraries (archived)
akshayparopkari/cut_run_analysis
An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.
akshayparopkari/kadambari
A collection of scripts.
akshayparopkari/2020-08-17-ucmerced
Carpentry workshop for GROW
akshayparopkari/akshayparopkari
My GitHub profile
akshayparopkari/akshayparopkari.github.io
My personal webpage
akshayparopkari/BiasAway
BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.
akshayparopkari/discover_tfbs
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
akshayparopkari/elcapitan-ansible
akshayparopkari/merced-cluster
Wiki and example on how to use the Merced Cluster.
akshayparopkari/Misc_bioinformatics
Stores scripts I commonly use during bioinformatic analysis so I don't have to dig through old code
akshayparopkari/phycorder
pipeline to place taxa in a phylogeny using NGS reads
akshayparopkari/phylotoast
Tools for phylogenetic data analysis including visualization and cluster-computing support.
akshayparopkari/phylotoast-docs
Project documentation for QIIME-tools
akshayparopkari/planets
Learning Git and GitHub workflow
akshayparopkari/practice_scripts
Repo of practice scripts that may or may not be useful for various bioinformatic purposes
akshayparopkari/python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
akshayparopkari/remote-jobs
A list of semi to fully remote-friendly companies in tech.
akshayparopkari/scikit-learn
scikit-learn: machine learning in Python
akshayparopkari/shell-genomics
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
akshayparopkari/three_circle_venn_diagram
Solving a three circle venn diagram word problem using pandas and matplotlib Python libraries
akshayparopkari/yfinance
Download market data from Yahoo! Finance's API