akshayparopkari

akshayparopkari's Stars

• crohrandt/nanopore_simulation

  Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

  Language:Python173

• aws/amazon-genomics-cli

  Language:Go14682

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Cython688273

• fl-yu/CUT-RUNTools-2.0

  CUT&RUN and CUT&Tag data processing and analysis

  Language:Shell8757

• dr-aheydari/DeepLearningGroup

  A repository for hosting links and resources presented during the Deep Learning Group meetings (Fall 2021).

  113

• rhondene/Codon-Usage-in-Python

  Python3 implementation of commonly used codon usage statistics

  Language:Python101

• OpenGene/repaq

  A fast lossless FASTQ compressor with ultra-high compression ratio

  Language:C12020

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.2k67

• upsetjs/upsetjs_jupyter_widget

  😠 Jupyter Widget bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams

  Language:Python12

• streamlit/streamlit

  Streamlit — A faster way to build and share data apps.

  Language:Python32.8k2.9k

• holoviz/hvplot

  A high-level plotting API for pandas, dask, xarray, and networkx built on HoloViews

  Language:Python99499

• mnapoli/IsItMaintained

  Monitor open source projects activity

  Language:PHP32525

• dask/distributed

  A distributed task scheduler for Dask

  Language:Python1.6k711

• machow/siuba

  Python library for using dplyr like syntax with pandas and SQL

  Language:Python1.1k48

• sjpfenninger/ipython-extensions

  IPython extensions

  Language:JavaScript637

• drivendataorg/cookiecutter-data-science

  A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

  Language:Python7.8k2.4k

• pydata/pandas-datareader

  Extract data from a wide range of Internet sources into a pandas DataFrame.

  Language:Python2.8k675

• carpentries/commons

  Carpentries Commons is a place for open sharing of reusable material, such as text for grants, or for job or tenure applications, slide decks for conferences, workshop descriptions, promotional copy, and so on.

  2912

• UKHomeOffice/posters

  Home Office Digital repository of posters covering different topics - research, access needs, accessibility, design.

  2.9k305

• loosolab/TOBIAS

  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

  Language:Python17837

• Dowell-Lab/DAStk

  Differential ATAC-seq toolkit

  Language:Python287

• rxhanson/Rectangle

  Move and resize windows on macOS with keyboard shortcuts and snap areas

  Language:Swift25k738

• carpentries/maintainer-onboarding

  718

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C912285

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python903172

• maxplanck-ie/snakepipes

  Customizable workflows based on snakemake and python for the analysis of NGS data

  Language:Python37285

• bndr/pipreqs

  pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.

  Language:Python5.9k376

• jsh58/Genrich

  Detecting sites of genomic enrichment

  Language:C17927

• facilebio/FacileAnalysis

  Modular & interactive analysis components for bioinformatics

  Language:R154

• rhondene/tRNA_introns

  Language:Jupyter Notebook1