Pinned Repositories
awesome-multi-omics
List of software packages for multi-omics analysis
compgen2016
compgenr
methylKit
R package for DNA methylation analysis
Rmarkdown_JSviz
Short tutorial on knitr/markdown and JS visualization libraries googleVis and rCharts
scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
genomation
R package for genomic feature analysis and visualization
mergen
AI-Driven Code Generation, Explanation and Execution for Data Analysis
book
al2na's Repositories
al2na/methylKit
R package for DNA methylation analysis
al2na/awesome-multi-omics
List of software packages for multi-omics analysis
al2na/scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
al2na/DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
al2na/awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
al2na/chemical_vae
Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow
al2na/The-world-of-faculty
resources for faculty
al2na/al2na.github.com
jekyll try out
al2na/aws-lex-browser-audio-capture
An example web application using the Lex JavaScript SDK to send and receive audio from the Lex PostContent API. Demonstrates how to capture an audio device, record audio, and convert the audio into a format that Lex will recognize, and play the response. All from a web browser.
al2na/batchelor
Clone of the Bioconductor repository for the batchelor package.
al2na/bsgenova
An accurate, robust, and fast genotype caller for bisulfite-sequencing data
al2na/chroma
the AI-native open-source embedding database
al2na/conditional-molecular-design-ssvae
al2na/dinov2
PyTorch code and models for the DINOv2 self-supervised learning method, own data set and own adapted training.
al2na/DoctorGPT
DoctorGPT is an LLM that can pass the US Medical Licensing Exam. It works offline, it's cross-platform, & your health data stays private.
al2na/gitbook
📝 Modern documentation format and toolchain using Git and Markdown
al2na/gpt-j
A GPT-J API to use with python3 to generate text, blogs, code, and more
al2na/howler.js
Javascript audio library for the modern web.
al2na/impute-me
This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.
al2na/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
al2na/mesh-transformer-jax
Model parallel transformers in JAX and Haiku
al2na/meth_atlas
al2na/ncps
PyTorch and TensorFlow implementation of NCP, LTC, and CfC wired neural models
al2na/northstar
Single cell type annotation guided by cell atlases, with freedom to be queer
al2na/ogb
Benchmark datasets, data loaders, and evaluators for graph machine learning
al2na/sagemaker-huggingface-llama-2-samples
al2na/SARS2_RBD_Ab_escape_maps
al2na/spacy-streamlit
👑 spaCy building blocks and visualizers for Streamlit apps
al2na/superpc
Supervised Principal Components
al2na/t-cell-relation-extraction
Literature mining for T cell relations