Pinned Repositories
awesome-multi-omics
List of software packages for multi-omics analysis
compgen2016
compgenr
methylKit
R package for DNA methylation analysis
Rmarkdown_JSviz
Short tutorial on knitr/markdown and JS visualization libraries googleVis and rCharts
scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
genomation
R package for genomic feature analysis and visualization
mergen
AI-Driven Code Generation, Explanation and Execution for Data Analysis
book
al2na's Repositories
al2na/compgenr
al2na/compgen2016
al2na/python-machine-learning-book
The "Python Machine Learning" book code repository and info resource
al2na/23andme2vcf
convert your 23andme raw file to VCF
al2na/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
al2na/bamsignals
R package to quickly obtain count vectors from indexed bam files
al2na/bimsbbioinfo
website for the platform
al2na/BioC2015Introduction
Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, Wa
al2na/bookdown
Authoring Books with R Markdown
al2na/clusteringReview
Code in Clustering Review Ronan et al. 2016
al2na/cmbr
CMB R Scripts
al2na/compgen
al2na/compgen_berlin2016
al2na/compgenr_exercises
exercises for R tutorials
al2na/d3examples
Examples of interactive graphics using d3.js
al2na/EDASeq
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/EDASeq.html Contributions: https://github.com/drisso/EDASeq. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=EDASeq or https://github.com/drisso/EDASeq/issues.
al2na/epicseg
Chromatin segmentation in R
al2na/genomation
R package for genomic feature analysis and visualization
al2na/genomation_presentation
knitr + beamer presentation for genomation package
al2na/hackathon_v001_rnaseq
RNAseq Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH
al2na/knitr-examples
a collection of knitr examples
al2na/last-rna
al2na/r-travis
Tools for using R with Travis (http://travis-ci.org) in lieu of a website:
al2na/rCharts
Interactive JS Charts from R
al2na/researchBlog
the source of my research blog
al2na/Rgitbook
Gitbook for R Markdown
al2na/rucl
add ProUCL functionality to R
al2na/SDIntroToR
Introduction to R
al2na/SIBERG
:exclamation: This is a read-only mirror of the CRAN R package repository. SIBERG — Systematic Identification of Bimodally Expressed Genes Using RNAseq Data. Homepage: http://oompa.r-forge.r-project.org/
al2na/stat-learning
Notes and exercise attempts for "An Introduction to Statistical Learning"