Pinned Repositories
bactmap
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
bioconda-recipes
Conda recipes for the bioconda channel.
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Matis_database
Design of a sqlite3 database for SNP data from salmon and herring
Matis_plink
plinkPy takes .ped and .map files exported from Plink as input. After parsing of both files into a single object in an OOP-manner, it allows to extract part of the data and export it back into .ped and .map files as well as csv, genepop and structure formats.
Matis_salmon
Programs to treat population genomics SNP data
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multi-package-containers
Testing building mulled containers for multi-requirement tools.
plate_aDNA_extraction
bioconda-recipes
Conda recipes for the bioconda channel.
alexandregilardet's Repositories
alexandregilardet/Matis_plink
plinkPy takes .ped and .map files exported from Plink as input. After parsing of both files into a single object in an OOP-manner, it allows to extract part of the data and export it back into .ped and .map files as well as csv, genepop and structure formats.
alexandregilardet/plate_aDNA_extraction
alexandregilardet/bactmap
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
alexandregilardet/bioconda-recipes
Conda recipes for the bioconda channel.
alexandregilardet/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
alexandregilardet/Matis_database
Design of a sqlite3 database for SNP data from salmon and herring
alexandregilardet/Matis_salmon
Programs to treat population genomics SNP data
alexandregilardet/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
alexandregilardet/multi-package-containers
Testing building mulled containers for multi-requirement tools.