Tools developed by the Alexandrov Team, EMBL / UCSD
Mainly for processing and analysis of mass spectrometry and imaging MS data
United States of America
Pinned Repositories
cpyMSpec
Fast high-resolution isotope pattern calculator
curatr
DeepCycle
code for DeepCycle paper
ims-cpp
Tools for spatial metabolomics
ims-direct-control
pyImagingMSpec
tools for manipulating imaging mass spectrometry data in python
pyimzML
A parser to read .imzML files with python
pyMSpec
tools for manipulating mass spectra in python
pySM
Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
SpaceM
Tools developed by the Alexandrov Team, EMBL / UCSD's Repositories
alexandrovteam/pyimzML
A parser to read .imzML files with python
alexandrovteam/pySM
Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
alexandrovteam/curatr
alexandrovteam/SpaceM
alexandrovteam/DeepCycle
code for DeepCycle paper
alexandrovteam/cpyMSpec
Fast high-resolution isotope pattern calculator
alexandrovteam/pyMSpec
tools for manipulating mass spectra in python
alexandrovteam/pyImagingMSpec
tools for manipulating imaging mass spectrometry data in python
alexandrovteam/ims-cpp
Tools for spatial metabolomics
alexandrovteam/ims-direct-control
alexandrovteam/IMS_quality
Scientific study on the quality of MALDI imaging mass spectrometry data.
alexandrovteam/MassFuser
alexandrovteam/predicting-APMALDI-response
Predict AP-MALDI Response using Machine Learning
alexandrovteam/sm-networks
Dataset/annotation networks
alexandrovteam/spatial-corals
Scientific study on spatial statistical analysis of Growth Anomaly lesions on coral colonies.
alexandrovteam/cpyImagingMSpec
alexandrovteam/microbial-metaspace
alexandrovteam/MRMConvert
Workflow for generating regular LC-MS data from the ones acquired in MRM mode
alexandrovteam/mzml2isa
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
alexandrovteam/PFG
Parallel Formula Generator
alexandrovteam/precomputed_isotope_patterns
alexandrovteam/probModel
alexandrovteam/pyims_simulate_evaluate
python module for simulating imaging mass spectrometry data and evaluating subsequent result
alexandrovteam/pysparkling
A pure Python implementation of Apache Spark's RDD and DStream interfaces.
alexandrovteam/pyTLC
tools for processing imaging of tlc plates
alexandrovteam/recalibration
alexandrovteam/S2IsoMEr
Spatial and Single cell Isomeric Metabolite enrichment in R
alexandrovteam/wheel_builders
Helper scripts for building cross-platform CFFI-based Python packages