Tools developed by the Alexandrov Team, EMBL / UCSD

Mainly for processing and analysis of mass spectrometry and imaging MS data

United States of America

Pinned Repositories

cpyMSpec
Fast high-resolution isotope pattern calculator
Language:Python6 6 02
curatr
Language:JavaScript143
DeepCycle
code for DeepCycle paper
Language:Jupyter Notebook9 2 02
ims-cpp
Tools for spatial metabolomics
Language:C++4 7 01
ims-direct-control
Language:Jupyter Notebook3 9 11
pyImagingMSpec
tools for manipulating imaging mass spectrometry data in python
Language:Jupyter Notebook5 7 22
pyimzML
A parser to read .imzML files with python
Language:Python32 11 1418
pyMSpec
tools for manipulating mass spectra in python
Language:Python6 5 03
pySM
Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
Language:Jupyter Notebook15 7 04
SpaceM
Language:Python10 4 05

Tools developed by the Alexandrov Team, EMBL / UCSD's Repositories

alexandrovteam/pyimzML
A parser to read .imzML files with python
Language:Python32 11 1418
alexandrovteam/pySM
Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
Language:Jupyter Notebook15 7 04
alexandrovteam/curatr
Language:JavaScript143
alexandrovteam/SpaceM
Language:Python10 4 05
alexandrovteam/DeepCycle
code for DeepCycle paper
Language:Jupyter Notebook9 2 02
alexandrovteam/cpyMSpec
Fast high-resolution isotope pattern calculator
Language:Python6 6 02
alexandrovteam/pyMSpec
tools for manipulating mass spectra in python
Language:Python6 5 03
alexandrovteam/pyImagingMSpec
tools for manipulating imaging mass spectrometry data in python
Language:Jupyter Notebook5 7 22
alexandrovteam/ims-cpp
Tools for spatial metabolomics
Language:C++4 7 01
alexandrovteam/ims-direct-control
Language:Jupyter Notebook3 9 11
alexandrovteam/IMS_quality
Scientific study on the quality of MALDI imaging mass spectrometry data.
Language:Matlab23
alexandrovteam/MassFuser
2 3 02
alexandrovteam/predicting-APMALDI-response
Predict AP-MALDI Response using Machine Learning
Language:Jupyter Notebook1 7 0
alexandrovteam/sm-networks
Dataset/annotation networks
Language:Python1
alexandrovteam/spatial-corals
Scientific study on spatial statistical analysis of Growth Anomaly lesions on coral colonies.
Language:Matlab11
alexandrovteam/cpyImagingMSpec
Language:Python1
alexandrovteam/microbial-metaspace
Language:Python
alexandrovteam/MRMConvert
Workflow for generating regular LC-MS data from the ones acquired in MRM mode
2 0
alexandrovteam/mzml2isa
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
Language:Python
alexandrovteam/PFG
Parallel Formula Generator
Language:C++6 0
alexandrovteam/precomputed_isotope_patterns
alexandrovteam/probModel
Language:Python6 0
alexandrovteam/pyims_simulate_evaluate
python module for simulating imaging mass spectrometry data and evaluating subsequent result
Language:Python1 0
alexandrovteam/pysparkling
A pure Python implementation of Apache Spark's RDD and DStream interfaces.
Language:Python
alexandrovteam/pyTLC
tools for processing imaging of tlc plates
Language:Python6 01
alexandrovteam/recalibration
Language:Python
alexandrovteam/S2IsoMEr
Spatial and Single cell Isomeric Metabolite enrichment in R
Language:R1
alexandrovteam/wheel_builders
Helper scripts for building cross-platform CFFI-based Python packages
Language:Shell6 0