Pinned Repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
bosc-2016-ggr-cwl
Abstract for BOSC 2016
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
CRISPR-JAMBOREE
2nd IGVF CRISPR-JAMBOREE (Feb 2024)
cwl-draft3-to-v1-parser
Upgrade CWL workflows and CLT from draft-3 to v1.0 syntax
cwltool
Common Workflow Language reference implementation
docker-hubutils
UCSC hub and bed utils in Docker
encoded
Metadata database for ENCODE project
fungidomDB
Database for fungal protein domain information
GGR-Visual
Visualizations for data exploration of the GGR project
alexbarrera's Repositories
alexbarrera/fungidomDB
Database for fungal protein domain information
alexbarrera/GGR-Visual
Visualizations for data exploration of the GGR project
alexbarrera/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
alexbarrera/bosc-2016-ggr-cwl
Abstract for BOSC 2016
alexbarrera/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
alexbarrera/CRISPR-JAMBOREE
2nd IGVF CRISPR-JAMBOREE (Feb 2024)
alexbarrera/cwl-draft3-to-v1-parser
Upgrade CWL workflows and CLT from draft-3 to v1.0 syntax
alexbarrera/cwltool
Common Workflow Language reference implementation
alexbarrera/docker-hubutils
UCSC hub and bed utils in Docker
alexbarrera/encoded
Metadata database for ENCODE project
alexbarrera/encValData
alexbarrera/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
alexbarrera/get-hic
alexbarrera/get-hic-docker
alexbarrera/GGR-cwl
CWL tools and workflows for GGR
alexbarrera/ggr-cwl-ipynb-gen
Jupyter notebook generator to download and execute the processing files for GGR related datasets
alexbarrera/GGR-Docker
Docker images for containerizing GGR analyses
alexbarrera/juicebox
Software for visualizing data from Hi-C and other proximity mapping experiments
alexbarrera/lab-meeting-20180315
Repository for lab meeting 2018/03/15
alexbarrera/MACS
MACS -- Model-based Analysis of ChIP-Seq
alexbarrera/majiq-voila-elife
Repository to support the reproducibility of the results contained in Vaquero et al. manuscript published in eLife
alexbarrera/pipeline_perturbseq_like
alexbarrera/pyencoded-tools
alexbarrera/reddylab-disk-usage
Summarize reddylab disk usage in HARDAC
alexbarrera/time-series-cwl
CWL pipeline to create the necessary files to create the visualizations offered in the time-series-viewers package (https://github.com/alexbarrera/time-series-viewers)
alexbarrera/time-series-viewers
Visualize time series sequencing data
alexbarrera/tinyatlas
A tiny cell atlas for commonly sequenced organisms.
alexbarrera/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
alexbarrera/velocyto.R
RNA velocity estimation in R
alexbarrera/workflows
Community maintained workflows & tools (with examples)