Duke Center for Genomic and Computational Biology

Durham, NC

Pinned Repositories

bespin-cwl
CWL workflows for Bespin
Language:Common Workflow Language3 6 392
calrissian
CWL on Kubernetes
Language:Python42 7 8814
docker-pipeline
Python tool to run docker containers in sequence, for reproducible computational analysis pipelines
Language:Python11 9 130
DukeDSClient
Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
Language:Python5 3 1776
gcb-ansible-roles
Ansible roles used by GCB Ansible Playbooks
Language:Jinja0 6 140
GCB-Dockerfiles
Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
Language:Python7 5 214
GGR-cwl
CWL tools and workflows for GGR
Language:Common Workflow Language21 8 317
iMADS
Web portal and supporting services that allow searching/creating TF predictions and preferences.
Language:JavaScript0 3 551
MMAP-Docker
Docker images for containerizing MMAP
Language:Shell2 6 40
Sun-Grid-Engine-Ansible
GridEngine deployment for SMRT Link cluster
Language:Ruby3 3 01

Duke Center for Genomic and Computational Biology's Repositories

Duke-GCB/calrissian
CWL on Kubernetes
Language:Python42 7 8814
Duke-GCB/GGR-cwl
CWL tools and workflows for GGR
Language:Common Workflow Language21 8 317
Duke-GCB/GCB-Dockerfiles
Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
Language:Python7 5 214
Duke-GCB/DukeDSClient
Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
Language:Python5 3 1776
Duke-GCB/bespin-ui
An ember.js application frontend for bespin-api
Language:JavaScript2 5 762
Duke-GCB/scicomp-python
Python lesson for GCB Academy: Intro to Scientific Computing
Language:Jupyter Notebook1 3 04
Duke-GCB/2022-08-15-duke
Website for the 2022 UPGG Informatics Orientation Bootcamp
Language:HTML0 6 00
Duke-GCB/D4S2
Web service to facilitate notification and transfer of projects in DukeDS
Language:Python0 3 1220
Duke-GCB/DukeDataDeliveryPipeline
Services that deliver data stored in Azure between users
0 4 01
Duke-GCB/gcb-ansible-roles
Ansible roles used by GCB Ansible Playbooks
Language:Jinja0 6 140
Duke-GCB/iMADS
Web portal and supporting services that allow searching/creating TF predictions and preferences.
Language:JavaScript0 3 551
Duke-GCB/2018-08-13-Duke
UPGG Informatics Orientation Bootcamp 2018
Language:Python2 01
Duke-GCB/2019-08-12-Duke
UPGG Informatics Orientation Bootcamp 2019
Language:Python3 2
Duke-GCB/2021-08-09-Duke
Website for the 2021 UPGG Informatics Orientation Bootcamp
Language:HTML6 0
Duke-GCB/2023-08-23-duke
Website for the 2023 UPGG Informatics Orientation Bootcamp
Language:HTML5 01
Duke-GCB/bespin-api
Web application for running workflows in the cloud
Language:Python5 862
Duke-GCB/bespin-jobtoken-generator
Language:Python6 0
Duke-GCB/bespin-mailer
Bespin mail delivery service
Language:Python4 3
Duke-GCB/biostat-823
Teaching materials for Biostat 823 course
Language:JavaScript1 0
Duke-GCB/biostat-jupyter
Jupyter Lab container for Biostat courses
Language:Dockerfile
Duke-GCB/datadelivery-ui
An ember.js application frontend for d4s2
Language:JavaScript4 39
Duke-GCB/gcb-web-auth
Django app that integrates Duke OAuth
Language:Python4 19
Duke-GCB/helmod
Harvard Extensions for Lmod deployment
Language:Ruby6 51
Duke-GCB/iMADS-worker
Worker for generating on-demand predictions using Docker and CWL in iMADS
Language:Python6 81
Duke-GCB/lando-util
Utilities used by lando related to running a workflow
Language:Python4 151
Duke-GCB/majoros-python-utils
Majoros lab python modules and scripts
Language:Python
Duke-GCB/openshift-shiny
OpenShift compatible Docker images/config for running shiny apps
Language:Dockerfile3 13
Duke-GCB/prospatheia
Web-based effort reporting tool for GCB informatics
Language:JavaScript5 331
Duke-GCB/shiny_PD
Language:R2 0
Duke-GCB/topdata
Website that dynamically generates trackhub directories
Language:Python3 6