Pinned Repositories
bespin-cwl
CWL workflows for Bespin
bespin-ui
An ember.js application frontend for bespin-api
calrissian
CWL on Kubernetes
docker-pipeline
Python tool to run docker containers in sequence, for reproducible computational analysis pipelines
DukeDSClient
Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
gcb-ansible-roles
Ansible roles used by GCB Ansible Playbooks
GCB-Dockerfiles
Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
GGR-cwl
CWL tools and workflows for GGR
iMADS
Web portal and supporting services that allow searching/creating TF predictions and preferences.
Sun-Grid-Engine-Ansible
GridEngine deployment for SMRT Link cluster
Duke Center for Genomic and Computational Biology's Repositories
Duke-GCB/docker-pipeline
Python tool to run docker containers in sequence, for reproducible computational analysis pipelines
Duke-GCB/Sun-Grid-Engine-Ansible
GridEngine deployment for SMRT Link cluster
Duke-GCB/MMAP-Docker
Docker images for containerizing MMAP
Duke-GCB/slurm-reporting
Small scripts and tools to report on usage of a cluster running SLURM
Duke-GCB/ansible-hackday
References and materials for GCB Informatics Ansible Hackday 2015-05-07
Duke-GCB/SciComp-Materials
Materials for GCB Academy course Intro to Scientific Computing for Genomics
Duke-GCB/SciComp-Oct-2016
Website for the Oct 2016 GCB Academy course "Introduction to Scientific Computing for Genomics"
Duke-GCB/SlurmFixer
Find and fix bad jobs in a slurm cluster
Duke-GCB/ansible-openstack
Deploy OpenStack on Bare Metal using Ansible
Duke-GCB/atmosphere
Where cloud lives.
Duke-GCB/atmosphere-ansible
Ansible instance deployment code for Atmosphere
Duke-GCB/DataC-HPC-genomics
Lesson on Cloud/HPC for genomics lessons
Duke-GCB/django-iplant-auth
All iPlant Auth schemes for use in a Django App
Duke-GCB/django-shibboleth-adapter
Adapter for integrating Shibboleth with the Django authentication system
Duke-GCB/docker-hackday
References and materials for GCB Informatics Docker Hackday 2016-03-10
Duke-GCB/docker-wrapper
Wrapper scripts for docker volume access
Duke-GCB/DockerPostgresBackup
Backup a Postgres database running inside a docker container to a volume.
Duke-GCB/drupal-security-check
Duke-GCB/igsp_web_cookie
Daemon and Command-line tools for the IgspNet Authentication system.
Duke-GCB/mariadb-docker-backup
Docker hackday output for backing up MariaDB via docker volumes
Duke-GCB/MMAP-cwl
Common Workflow Language tool and workflow definitions for MMAP pipeline
Duke-GCB/python-web-base
Duke-GCB/rt-slack
Scrip for posting messages to Slack via webhooks
Duke-GCB/SciComp-Mar-2016
Website for the March 2016 GCB Academy course Introduction to Scientific Computing for Genomics
Duke-GCB/SciComp-Oct-2015
Website for the Oct 2015 GCB Academy course Introduction to Scientific Computing for Genomics
Duke-GCB/ScriptWrapper
Script that runs a command based on $PATH for hard coded scripts.
Duke-GCB/SLURM_Status
Script reporting status of a SLURM cluster.
Duke-GCB/svr-track-hub
Make+Docker to build a UCSCGB Track Hub
Duke-GCB/TrackHubGenerator
Python and Make tools for generating UCSC Track Hubs
Duke-GCB/troposphere
Atmosphere web client