Duke-GCB/calrissian

Issues

• Allow requesting RO-Crate provenance (next cwltool release)

  #166 opened 8 months ago by davidjsherman
  4

• Allow setting the container when the pod has more than one container

  #149 opened a year ago by fabricebrito
  2

• Feedback for CWL v1.2.1 requested

  #157 opened a year ago by acoleman2000
  5

• How many CWL v1.0, 1.1, and v1.2 conformance tests does Calrissian pass?

  #121 opened 3 years ago by mr-c
  3

• secrets extension not supported in EnvVarRequirement

  #145 opened 2 years ago by fabricebrito
  0

• ToolTimeLimit

  #147 opened a year ago by fabricebrito
  0

• AKS error: running PreBind plugin "VolumeBinding": binding volumes: timed out waiting for the condition

  #154 opened 10 months ago by johnmcswain
  2

• Aging dependencies and Python 3.7

  #160 opened 10 months ago by fabricebrito
  2

• log command-line for each step run

  #101 opened a year ago by johnbradley
  0

• Create the tool log directory if it does not exist

  #158 opened a year ago by fabricebrito
  0

• Unable to run example on OpenShift 3.11

  #95 opened a year ago by amalic
  3

• Conditional execution support

  #133 opened a year ago by yogeshVU
  3

• Align pod requests and limits with CWL ResourceRequirements

  #144 opened 2 years ago by emmanuelmathot
  0

• docker image migration from docker.com

  #143 opened a year ago by emmanuelmathot
  1

• Creating an option for job and master pod self-deletion

  #146 opened a year ago by CommanderBlop
  6

• KubernetesClient.follow_logs() exits before getting all logs

  #60 opened 2 years ago by dleehr
  2

• nodeSelector for pods spawned by calrissian

  #126 opened 2 years ago by fabricebrito
  1

• serviceAccount selection

  #127 opened 2 years ago by fabricebrito
  1

• automatically update docker container

  #130 opened 2 years ago by AriBad
  2

• Recommendation for Job Managers on K8s that works with Calrissian

  #134 opened 2 years ago by CommanderBlop
  1

• follow_logs may raise UnicodeDecodeError

  #136 opened 2 years ago by fabricebrito
  1

• How to cite Calrissian?

  #122 opened 3 years ago by mr-c
  4

• tmp_out directory not readable

  #110 opened 3 years ago by emmanuelmathot
  3

• contributing support for running calrissian on AKS (Azure), EKS (AWS) and GKE (Google)

  #124 opened 3 years ago by pymonger
  3

• Invalid cross-device link running on Azure Kubernetes Service

  #123 opened 3 years ago by pymonger
  1

• Understanding the architecture and questions on user space

  #118 opened 3 years ago by sneumann
  1

• Permission Denied in workingDir

  #105 opened 4 years ago by bbrauzzi
  1

• How to use --max-cores and --max-ram parameters

  #103 opened 5 years ago by michael-kotliar
  2

• Tracking of allocated resources may go negative

  #66 opened 5 years ago by dleehr
  1

• Jobs with many parallel tasks cause GKE cluster failures

  #96 opened 5 years ago by dleehr
  16

• CWL 1.0 CT173 Test Docker ENTRYPOINT usage

  #86 opened 5 years ago by dleehr
  5

• CWL 1.0 CT191 Test non-stdin reference to literal File via a Directory literal

  #88 opened 5 years ago by dleehr
  1

• CWL 1.0 CT190 Pipe to stdin from literal File via a Directory literal

  #87 opened 5 years ago by dleehr
  1

• CWL 1.0 CT120 Test file literal as input without Docker

  #85 opened 5 years ago by dleehr
  1

• CWL 1.0 CT90: Test file literal as input

  #84 opened 5 years ago by dleehr
  1

• Run conformance tests in CI

  #90 opened 5 years ago by dleehr
  0

• Use the canonical copy of the CWL conformance tests

  #82 opened 5 years ago by mr-c
  3

• CWL 1.0 CT103: Test dockerOutputDirectory

  #75 opened 5 years ago by dleehr
  0

• CWL 1.0 CT50 Test InitialWorkDirRequirement linking input files and capturing secondaryFiles on input and output.

  #83 opened 5 years ago by dleehr
  1

• Run CWL conformance tests

  #71 opened 5 years ago by dleehr
  4

• CWL 1.0 CT122: Test that boolean flags do not appear on command line if inputBinding is empty and not null

  #77 opened 5 years ago by dleehr
  0

• CWL 1.0 CT123: Test that expression engine does not fail to evaluate reference to self with unprovided input

  #78 opened 5 years ago by dleehr
  0

• CWL 1.0 CT119: Test file literal as input without Docker

  #76 opened 5 years ago by dleehr
  0

• CWL 1.0 CT68: Test that second expression in concatenated valueFrom is not ignored

  #73 opened 5 years ago by dleehr
  0

• CWL 1.0 CT89: Test file literal as input

  #74 opened 5 years ago by dleehr
  0

• child pods stuck creating when using read only gcePersistentDisk

  #79 opened 5 years ago by johnbradley
  1

• Memory leaks

  #67 opened 5 years ago by dleehr
  1

• Clarify when --tmpdir-prefix is necessary

  #65 opened 6 years ago by dleehr
  1

• Error running long workflow

  #58 opened 6 years ago by johnbradley
  2

• Upgrade PyYAML

  #63 opened 6 years ago by dleehr
  1