cwl
There are 228 repositories under cwl topic.
common-workflow-language/common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
arvados/arvados
An open source platform for managing and analyzing biomedical big data
common-workflow-language/cwltool
Common Workflow Language reference implementation
rabix/composer
Visual and code editor for Common Workflow Language
Barski-lab/cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
CBICA/CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
EBI-Metagenomics/emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
reanahub/reana
REANA: Reusable research data analysis platform
dockstore/dockstore
An app store for scientific workflows, tools, notebooks, and services
ga4gh/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
rabix/cwl-svg
A library for generating an interactive SVG visualization of CWL workflows
common-workflow-library/bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
ResearchObject/ro-crate-py
Python library for RO-Crate
rabix/bunny
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
4dn-dcic/tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
rabix/benten
A language server for Common Workflow Language
rabix/cwl-ts
Typescript data model for Common Workflow Language
Duke-GCB/calrissian
CWL on Kubernetes
common-workflow-language/cwlviewer
A web application to view and share Common Workflow Language workflows
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
common-workflow-language/user_guide
The CWL v1.0 - v1.2 user guide
common-workflow-language/cwl-utils
Python utilities for CWL
NLeSC/scriptcwl
Create cwl workflows by writing a simple Python script
stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
yuch7/cwlexec
A new open source tool to run CWL workflows on LSF
yyoshiaki/VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
nlppln/nlppln
NLP pipeline software using common workflow language
dnanexus/dxCompiler
WDL and CWL compiler for the DNAnexus platform
ga4gh/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
otiai10/hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
common-workflow-lab/wdl2cwl
[Experimental] Workflow Definition Language (WDL) to CWL
crim-ca/weaver
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
common-workflow-lab/wdl-cwl-translator
A translator from WDL to CWL v1.2
EBI-Metagenomics/pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Daylily-Informatics/daylily-ephemeral-cluster
(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.