Pinned Repositories
bespin-cwl
CWL workflows for Bespin
bespin-ui
An ember.js application frontend for bespin-api
calrissian
CWL on Kubernetes
docker-pipeline
Python tool to run docker containers in sequence, for reproducible computational analysis pipelines
DukeDSClient
Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
gcb-ansible-roles
Ansible roles used by GCB Ansible Playbooks
GCB-Dockerfiles
Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
GGR-cwl
CWL tools and workflows for GGR
iMADS
Web portal and supporting services that allow searching/creating TF predictions and preferences.
Sun-Grid-Engine-Ansible
GridEngine deployment for SMRT Link cluster
Duke Center for Genomic and Computational Biology's Repositories
Duke-GCB/bespin-cwl
CWL workflows for Bespin
Duke-GCB/bespin
Reproducible genomic workflows in the cloud
Duke-GCB/cwl-freezer
Tool to snapshot and export a CWL document, and freeze its referenced Docker images
Duke-GCB/drf-ember-backend
Backend code to enable Ember Data when using the Django REST Framework
Duke-GCB/drf-ember-frontend
Ember Addon to connect to Django REST Framework
Duke-GCB/hook-build
Listens for github webhook, validates secret and runs a script
Duke-GCB/Predict-TF-Binding
Python scripts for modeling and predicting TF-DNA binding using libsvm
Duke-GCB/2018-07-26-Duke
Data Carpentry for Genomics Workshop at Duke University, July 26-27, 2018
Duke-GCB/2019-12-18-duke
Data Carpentry for Genomics workshop Dec 2019
Duke-GCB/bespin-cli
Command line client for Bespin
Duke-GCB/bespin-debug
Helm chart that creates a service for debugging a bespin job
Duke-GCB/bespin-job-watcher
Allows users to receive job status notification updates for bespin-api
Duke-GCB/bespin-webapp-docker
Dockerfile and docker-compose script for running bespin-api and bespin-ui together
Duke-GCB/datadelivery-cli
Command line program to deliver s3 buckets to other users via D4S2
Duke-GCB/ddh
Depmap musings
Duke-GCB/duke-data-service-portal
A web portal built on the Duke Data Service API
Duke-GCB/ElucidatorRestart
Elucidator Restart Service
Duke-GCB/lando
Lando's not a man, he's a system
Duke-GCB/lando-messaging
Messaging component of lando project
Duke-GCB/lando-util
Utilities used by lando related to running a workflow
Duke-GCB/old-directory-pruner
Duke-GCB/Predict-TF-Preference
R scripts to predict preferences between two TFs using data from predict-tf-binding
Duke-GCB/scicomp-hpc
Duke-GCB/SciComp-Nov-2017
Website for the Nov 2017 GCB Academy course "Introduction to Scientific Computing for Genomics"
Duke-GCB/SciComp-Nov-2019
Website for the Nov 2019 GCB Academy course "Introduction to Scientific Computing for Genomics"
Duke-GCB/SciComp-Oct-2018
Website for the Oct 2018 GCB Academy course "Introduction to Scientific Computing for Genomics"
Duke-GCB/shell-genomics
Duke-GCB/slurm-gcp
Slurm on Google Cloud Platform
Duke-GCB/SparkSlurm
Notes and scripts for running Spark on a slurm cluster.
Duke-GCB/toil
Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the principles of functional programming.