Pinned Repositories
agnostos-wf
Augustus
Genome annotation with AUGUSTUS
developments-in-next-generation-sequencing
Developments in next generation sequencing: instruments, read lengths, throughput. See
instaGRAAL
Large genome reassembly based on Hi-C data. Continuation of GRAAL Software from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), and Marie-Nelly 2013, PhD thesis (https://www.theses.fr/2013PA066714)
IonCtDNA
Ion Torrent plugin to etimate the proportion of circulating tumor DNA in blood samples
IonNIPT
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
IonPlotCoverage
ThermoFisher Ion Torrent plugin to plot amplicon coverage
sanefalcon
SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
ToolDirectory
Dynamic visualization of softwares managed by a Bioinformatics Core Facility
alexcorm's Repositories
alexcorm/IonNIPT
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
alexcorm/developments-in-next-generation-sequencing
Developments in next generation sequencing: instruments, read lengths, throughput. See
alexcorm/sanefalcon
SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
alexcorm/agnostos-wf
alexcorm/Augustus
Genome annotation with AUGUSTUS
alexcorm/instaGRAAL
Large genome reassembly based on Hi-C data. Continuation of GRAAL Software from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), and Marie-Nelly 2013, PhD thesis (https://www.theses.fr/2013PA066714)
alexcorm/IonCtDNA
Ion Torrent plugin to etimate the proportion of circulating tumor DNA in blood samples
alexcorm/IonPlotCoverage
ThermoFisher Ion Torrent plugin to plot amplicon coverage
alexcorm/biocode
Bioinformatics code libraries and scripts
alexcorm/BOSS
A new algorithm for scaffolding
alexcorm/BRAKER_singularity
Singularity def file template for BRAKER
alexcorm/ectocarpus_scripts-1
Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper
alexcorm/ElConcatenero
alexcorm/emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
alexcorm/galaxy-hub
Galaxy Community Hub
alexcorm/ion-wisecondor
Life ion torrent plugin using wisecondor
alexcorm/M2-GGB
alexcorm/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
alexcorm/online-cv
A minimal Jekyll Theme to host your resume (CV)
alexcorm/quick_phylo_BUSCO
alexcorm/SCOP
A novel scaffolding algorithm based on contig classification and optimization
alexcorm/Scratch
Unfinished or one shot scripts
alexcorm/sgtr
Visualize population genomics analyses results in R
alexcorm/Tips
alexcorm/tools
alexcorm/training-material
A collection of Galaxy-related training material
alexcorm/wisecondor
WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data. NEWS: NOW INCLUDES AN INTERACTIVE RESULT BROWSER.