alexturcoo

alexturcoo's Stars

• niu-lab/msisensor-ct

  Microsatellite instability (MSI) detection for cfDNA samples.

  Language:Makefile183

• paoloshasta/shasta

  De novo assembly from Oxford Nanopore reads.

  Language:C++7411

• mdozmorov/MDnotes

  Links to all data science, genomics, and other notes

  466

• abcsFrederick/non-B_gfa

  Identify non-B forming motifs

  Language:C86

• pangenome/odgi

  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  Language:C++19841

• vgteam/sequenceTubeMap

  displays multiple genomic sequences in the form of a tube map

  Language:JavaScript18627

• asl/BandageNG

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++11610

• human-pangenomics/hprc-tutorials

  Language:HTML134

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C533111

• bayesomicslab/ONT-nonb-GoFAE-DND

  Deep statistical model for predicting non-B DNA structures from ONT sequencing

  Language:Python3

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C42438

• maickrau/GraphAligner

  Language:C++26333

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k195

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k621

• skovaka/uncalled4

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• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python16221

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++56068

• nanoporetech/tombo

  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

  Language:Python23354

• loukesio/ggvolc

  𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation

  Language:R644

• dviraran/xCell

  Cell types enrichment analysis

  Language:HTML19062

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python38338

• thomasp85/patchwork

  The Composer of ggplots

  Language:R2.5k163

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java990371

• blackstonep/Numerical-Recipes

  All header files from numerical recipes. 3rd Edition.

  Language:C207105

• ablab/spades

  SPAdes Genome Assembler

  Language:C++774139