Pinned Repositories
ajabadi.github.io
aljabadi.github.io
Code that'll help you kickstart a personal website that showcases your work as a software developer.
Altools
Some of my commonly used wrappers and function utils
awesome-multi-omics
List of software packages for multi-omics analysis
badgecreatr
Quickly place relevant badges at the top of your readme, stop copy pasting, start on your project
BERTorchSim
BIRSBIO2020.scNMTseq.PLS
BIRS Bio-integration 2020 scNMTseq challenge analysis using PLS approach
logster
Easy python console logging with colourful formatting
MINT_sPLSDA
Application of mixOmics' MINT tool in Single Cell Data Analysis
Hackathon
Multi-omics studies are available here
aljabadi's Repositories
aljabadi/awesome-multi-omics
List of software packages for multi-omics analysis
aljabadi/Banff_reproducible_analysis_example
A reproducible Rproject using renv
aljabadi/BiocParallel
Bioconductor facilities for parallel evaluation
aljabadi/BIRSBIO2020.scNMTseq.MOSAIC
Multi-Omics Supervised Integrative Clustering (MSOAIC) analysis on scNMTseq data for BIRSBIO2020
aljabadi/BIRSBIO2020.scNMTseq.sPLS
aljabadi/Bookdown
aljabadi/BuildABiocWorkshop2020
Template for building a bioconductor workshop package using github actions
aljabadi/crimmix
aljabadi/FootprintMethods_on_scRNAseq
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
aljabadi/iHMP
aljabadi/jonocarroll
Jonathan Carroll
aljabadi/matrix-multiplication-in-R
aljabadi/mixOmics2
mixOmics supporting MultiAssayExperiment class - in development
aljabadi/MOFA
Multi-Omics Factor Analysis
aljabadi/MOFA2
Multi-Omics Factor Analysis V2 (MOFA+)
aljabadi/MultiAssayExperiment
Bioconductor package for management of multi-assay data
aljabadi/muscat-comparison
aljabadi/propr
An R package to calculate proportionality between vectors of compositional data
aljabadi/remotes
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
aljabadi/sc_sPLS
Pilot sPLS analysis of joint-profiled AML cells
aljabadi/scater
Clone of the Bioconductor repository for the scater package.
aljabadi/scNMT_seq_gastrulation
Hackathon Analyses
aljabadi/SCTranform-performance
Using CellBench Data
aljabadi/sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
aljabadi/SingleCellThoughts
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow, see https://ltla.github.io/SingleCellThoughts for the compiled version.
aljabadi/sRDA-sPLS
aljabadi/The-Elements-of-Statistical-Learning-Python-Notebooks
A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book
aljabadi/timeOmics_BioC
aljabadi/TravisTest
Test repo to test things on Travis CI
aljabadi/XMLRPC