allenbaron
Biocurator, data analyst and developer supporting @DiseaseOntology
University of Maryland School of MedicineBaltimore, MD
Pinned Repositories
.github
Community files
allenbaron.github.io
Anki_cards
Scripts to create Anki_cards programmatically from R help docs.
Baltimore_Housing
Collection of scripts to deal with data relevant to housing in Baltimore City
DO_dev
Trinotate_extend
Trinotate source code
EcoAction
assessing_DO_use
The code, data, and figures used or produced in the case study with the Human Disease Ontology for "Assessing Resource Use: A Case Study with the Human Disease Ontology" (DATABASE).
DO.utils
R package for improvement and analysis of the Human Disease Ontology (DO), including semi-automated use assessment from published literature.
HumanDiseaseOntology
Repository for the Human Disease Ontology.
allenbaron's Repositories
allenbaron/Baltimore_Housing
Collection of scripts to deal with data relevant to housing in Baltimore City
allenbaron/.github
Community files
allenbaron/allenbaron.github.io
allenbaron/Anki_cards
Scripts to create Anki_cards programmatically from R help docs.
allenbaron/biomappings
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
allenbaron/Coursera_DevelopingDataProducts
allenbaron/DO_dev
allenbaron/Trinotate_extend
Trinotate source code
allenbaron/Coursera_PracticalMachineLearning
allenbaron/europepmc
R Interface to Europe PMC RESTful Web Service
allenbaron/giterateR
Code Execution Iterater across Git Refs
allenbaron/github-pages-with-jekyll
allenbaron/HumanDiseaseOntology
Repository for the Human Disease Ontology.
allenbaron/JABmisc
Utility Functions for Data Analysis
allenbaron/obo_parser
Parses ontologies in .obo format (such as the Human Phenotype Ontology) and converts them to a .tsv table.
allenbaron/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
allenbaron/purl.obolibrary.org
A system for managing OBO PURLs
allenbaron/Random
allenbaron/rcrossref
R client for various CrossRef APIs
allenbaron/rentrez
talk with NCBI entrez using R
allenbaron/RepData_PeerAssessment1
Coursera, Data Science Specialization, Reproducible Research course, Peer Assessment 1 submission
allenbaron/robot
ROBOT is an OBO Tool
allenbaron/semantic-mapping-vocabulary
https://mapping-commons.github.io/semantic-mapping-vocabulary/
allenbaron/stringr
A fresh approach to string manipulation in R
allenbaron/Webscraping