allenbaron

allenbaron's Stars

• tchapi/markdown-cheatsheet

  Markdown Cheatsheet for Github Readme.md

  5k79146.4k

• krassowski/complex-upset

  A library for creating complex UpSet plots with ggplot2 geoms

  Language:Jupyter Notebook474917929

• obophenotype/human-phenotype-ontology

  Ontology for the description of human clinical features

  Language:Makefile2972710.6k52

• ropensci/rentrez

  talk with NCBI entrez using R

  Language:R1981418038

• OBOFoundry/OBOFoundry.github.io

  Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

  Language:Python16745922206

• obophenotype/cell-ontology

  An ontology of cell types

  Language:Makefile152241.7k50

• obophenotype/uberon

  An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

  Language:Emacs Lisp135282.5k30

• w3c/sparql-dev

  SPARQL dev Community Group

  1247016619

• EBISPOT/OLS

  Ontology Lookup Service from SPOT at EBI

  Language:JavaScript982056941

• The-Sequence-Ontology/SO-Ontologies

  Collect of SO Ontologies

  Language:Makefile961564437

• OBOFoundry/purl.obolibrary.org

  A system for managing OBO PURLs

  Language:Python789200128

• awinecki/magicfile

  Simple Makefile template for documenting frequent commands.

  Language:Makefile52223

• evidenceontology/evidenceontology

  Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

  Language:HTML501429820

• ebi-chebi/ChEBI

  Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds.

  46154.6k10

• test-room-7/action-update-file

  Update (i.e. commit and push) files on GitHub

  Language:TypeScript4031210

• INCATools/boomer

  Bayesian OWL ontology merging

  Language:Scala288372

• obophenotype/ncbitaxon

  Build for NCBITaxon

  Language:Python2713587

• INCATools/obographviz

  Customizable translation of OBO graphs to dot for visualization using graphviz and other tools

  Language:JavaScript2410206

• monarch-initiative/GENO-ontology

  Repository for representing genotypes and their association with phenotypes

  Language:Makefile1830556

• Elysheba/DODO

  Language:HTML11212

• EnvironmentOntology/gaz

  An open source gazetteer constructed on ontological principles

  Language:Makefile713425

• infectious-disease-ontology/infectious-disease-ontology

  The source code of Infectious Disease Ontology (IDO)

  67132

• elvirakinzina/Disease-ontology

  Language:Web Ontology Language5400

• mmayers12/disease-ontology

  Language:Jupyter Notebook4100

• YuLab-SMU/HDO.db

  A new version of DO.db

  Language:R4454

• Onto-Med/OWL2GraphML

  Generates GraphML from OWL ontologies

  Language:Java3300

• cthoyt/orcidio

  🐨 Make a subset of ORCID available as an OWL ontology

  Language:Python227

• gouttegd/grainyhead

  Helper tools for GitHub

  Language:Python22203

• cerdman/disease-ontology

  Tools and source for the Disease Ontology browser

  Language:Web Ontology Language1100

• polyg314/DiseaseOntology

  For BioThings SDK DiseaseOntology Plugin

  Language:Python1100