ropensci/rentrez

Issues

• Timeout Error only in loop

  #198 opened 2 months ago by chemoton
  1

• genome DB is unavailable

  #196 opened 3 months ago by karl-cottenie
  5

• Help retrieving abstract and keywords

  #197 opened 3 months ago by ZuaniaColon
  0

• Proximity operator in rentrez (possibly Feature Request)

  #195 opened 3 months ago by julieaaj
  1

• Random sample of large set of search results

  #194 opened 6 months ago by hlappen
  1

• Using web history instead of ids returns more results than expected

  #193 opened a year ago by stitam
  5

• Download parts of a large sequence

  #192 opened a year ago by valkm2
  0

• HTTP failure: 500

  #162 opened 4 years ago by SuzeMa
  2

• How to download large Clinvar tabular table

  #182 opened 2 years ago by manburst
  2

• multiple check_xml_errors when using entrez_link of protien IDs of Metagenomic assembled genomes from NCBI

  #186 opened 2 years ago by DeaconOfBiology
  2

• Order of the ids in entrez_search sorted in a different way than web search

  #191 opened 2 years ago by AdeFouchier
  1

• Institution/organization info via rentrez

  #189 opened 2 years ago by trilisser
  4

• how to get 'note graph' from FEATURES by `entrez_summary`

  #190 opened 2 years ago by trilisser
  0

• Error in ans[[1]] : subscript out of bounds

  #187 opened 2 years ago by drumstick90
  3

• entrez_link returns inconsistent results

  #188 opened 2 years ago by xinf2
  1

• Search and fetch are providing the wrong data?

  #185 opened 2 years ago by maryemmaj
  3

• entrez_link sometimes doesn't return "$nuccore_pubmed"

  #184 opened 2 years ago by niki0211
  5

• How to output metadata of interest?

  #183 opened 2 years ago by michael-mazzucco
  3

• Suggest: more helpful error message for entrez_search with high retmax value

  #158 opened 4 years ago by richelbilderbeek
  4

• Web history object - No esummary records found in file

  #178 opened 3 years ago by d-caraballo
  6

• Get PubMed metadata from large amount of articles

  #180 opened 3 years ago by LauraVP1994
  3

• how to get protein feature information

  #181 opened 2 years ago by tangwei1129
  3

• Inconsistent behaviour and unnecessary warning when entrez_link called with single ID and by_id = TRUE

  #175 opened 3 years ago by johnomics
  1

• Making entrez_fetch output accessible in R

  #179 opened 3 years ago by ellalalalalalala
  3

• HTTP failure 414 (the request is too large) even with entrez_search(use_history = TRUE)

  #163 opened 4 years ago by SchmidtPaul
  9

• entrez_summary does not retrieve all the record

  #177 opened 3 years ago by tdyoshida
  3

• getting all text data from pubmed articles

  #176 opened 3 years ago by Hilal-Urun
  4

• entrez_post and fetch do not return the same results

  #173 opened 3 years ago by JonathonMifsud
  0

• `entrez_fetch` returns multiple records from the `nuccore` database when given one ID

  #172 opened 3 years ago by ajrominger
  2

• How to specify genome assembly

  #171 opened 4 years ago by NavXav
  0

• entrez_link: Error in res[[1]] : subscript out of bound

  #152 opened 4 years ago by SuzeMa
  2

• `parse_pubmed_xml` erases sections/header labels in PMC abstracts

  #170 opened 4 years ago by gwern
  2

• Subname searchers

  #169 opened 4 years ago by peterscott1980
  0

• HTTP failure 414, the request is too large for entrez_fetch

  #168 opened 4 years ago by thdiakon
  0

• Feature Request: Boolean composition operators for esearch with web_history objects

  #167 opened 4 years ago by billdenney
  0

• Feature Request: use_history in entrez_search becomes web_history

  #166 opened 4 years ago by billdenney
  0

• API rate limiting for concurrent processes

  #161 opened 4 years ago by epruesse
  1

• Bug fix: entrez_search doesn't run for rettype = "count"

  #153 opened 4 years ago by maia-sh
  1

• how to get more than 100 entries when using entrez_search

  #151 opened 4 years ago by HediaTnani
  1

• Acessing Biosample Attributes

  #154 opened 4 years ago by fconstancias
  1

• API rate limit exceeded

  #156 opened 4 years ago by DannyArends
  1

• Improve error message when using a nonsense database

  #157 opened 4 years ago by richelbilderbeek
  2

• Suggest: full URL in error message

  #159 opened 4 years ago by richelbilderbeek
  1

• Discrepancy between number of sequences retrieved via web_history and number of sequence IDs

  #160 opened 4 years ago by mbarkdull
  2

• PUBMED scraping MeSh associated terms

  #148 opened 4 years ago by SalvatoreRa
  1

• Error: Must specify either (not both) 'id' or 'web_history' arguments

  #146 opened 4 years ago by arteteco
  4

• refseq select id from ENSEMBL id

  #147 opened 4 years ago by cb4github
  1

• How to get the GEO update list?

  #149 opened 4 years ago by cgh2797
  1

• How to use efetch with the new query format?

  #155 opened 4 years ago by anleopa
  5

• Discrepancy between Pubmed Search results and entrez_search()

  #150 opened 5 years ago by rachitest
  3