monarch-initiative/GENO-ontology

Issues

• Implement github action to run a geno release

  #64 opened a year ago by mbrush
  1

• Add textual definitions for zygosity terms.

  #63 opened a year ago by mbrush
  7

• Add support for concept "nullizygosity"

  #62 opened a year ago by ppavlidis
  5

• Change GENO license from CC-BY-SA to a CC-BY 4

  #56 opened 3 years ago by matentzn
  4

• grouping term for population, strain, background, fish, genotype, model?

  #55 opened 3 years ago by sierra-moxon
  1

• Representing uniparental disomy

  #43 opened 6 years ago by mbrush
  14

• Consider replacing some terms with PCO classes

  #53 opened 4 years ago by ramonawalls
  0

• Include OBO and JSON as released files

  #42 opened 4 years ago by kltm
  3

• Questionable IRIs

  #12 opened 5 years ago by ccondit
  1

• new inheritance terms

  #50 opened 5 years ago by sbello
  1

• stalk/short arm and acen terms

  #49 opened 5 years ago by TomConlin
  0

• RO compatibility issue

  #47 opened 5 years ago by matentzn
  4

• Do not use raw github URLs in imports

  #44 opened 5 years ago by cmungall
  2

• geno-developer imports itself

  #45 opened 5 years ago by cmungall
  0

• term request: mosaic inheritance and/or genotype

  #41 opened 6 years ago by kshefchek
  1

• Alternative label on http://www.geneontology.org/formats/oboInOwl#hasDbXref in geno.owl

  #40 opened 6 years ago by dosumis
  1

• Mechanism of Pathogenicity terms

  #39 opened 6 years ago by mbrush
  1

• Mode of Inheritance classes

  #22 opened 9 years ago by mbrush
  6

• Terms to describe transmission/inheritance of variance (from DECIPHER)

  #35 opened 7 years ago by mbrush
  1

• Represenetaiton of copy number variation

  #38 opened 6 years ago by mbrush
  0

• Typo in label for GENO:0000147

  #37 opened 6 years ago by beckyjackson
  1

• Integration issues with SciGraph

  #36 opened 6 years ago by kshefchek
  8

• Extend to model complex transgenics (such as CRISPR) and overexpression

  #31 opened 8 years ago by jmcmurry
  3

• Clarification on "gene allele" http://purl.obolibrary.org/obo/GENO_0000014

  #34 opened 7 years ago by nataled
  4

• Implement classes describing phenotype/disease penetrance

  #33 opened 7 years ago by mbrush
  0

• Add 'diplotype' class

  #32 opened 8 years ago by mbrush
  1

• Collecting use cases/requirements for genotype data representation and use

  #29 opened 8 years ago by mbrush
  6

• Collect set of GENO competency questions

  #30 opened 8 years ago by mbrush
  0

• Species specific classes for genome, chromosomes, and their parts

  #13 opened 10 years ago by mbrush
  0

• promoters driving expression

  #20 opened 8 years ago by nlwashington
  10

• karyotype

  #16 opened 8 years ago by nlwashington
  3

• haplotype

  #23 opened 8 years ago by nlwashington
  2

• geno0000846

  #28 opened 8 years ago by TomConlin
  2

• Use OBO obsoletion policy for retired IRIs

  #27 opened 8 years ago by cmungall
  0

• Add slides or link to slides in this repo

  #26 opened 9 years ago by cmungall
  2

• Document how gene interactions are modeled

  #25 opened 9 years ago by cmungall
  1

• Typo in the human taxon name

  #24 opened 9 years ago by jnguyenx
  3

• germline vs somatic variants

  #19 opened 10 years ago by nlwashington
  2

• reference and alternate base properties

  #21 opened 10 years ago by nlwashington
  1

• genetic disease polygenic vs. monogenic

  #18 opened 10 years ago by mellybelly
  1

• need more chr stains

  #17 opened 10 years ago by nlwashington
  1

• epigenetic genotype (epitype?)

  #15 opened 10 years ago by nlwashington
  1

• SO term requests

  #14 opened 10 years ago by mbrush
  0

• review various genomic rearrangement notation

  #11 opened 10 years ago by nlwashington
  0

• sex chromosomes in non-mammals

  #10 opened 10 years ago by nlwashington
  0

• Align with DDGENMOD

  #9 opened 10 years ago by cmungall
  0

• Add classes of genetic sex

  #8 opened 10 years ago by selewis
  0

• Map GENO to HPO inheritance/dominance

  #6 opened 10 years ago by mbrush
  2

• susceptable_to relationship

  #7 opened 10 years ago by mbrush
  0

• IMPReSS assays and phenotypes for KOMP2

  #5 opened 10 years ago by mbrush
  0