INCATools/boomer

Issues

• Merging 14 Ontologies (huge merge)

  #403 opened 10 months ago by OliverHex
  6

• "No possible resolution of perplexity" + no results

  #399 opened a year ago by OliverHex
  11

• Add additional diagnostics to figure out points where boomer doesn't complete

  #361 opened a year ago by cmungall
  1

• fail fast if there are no satisfiable solutions

  #369 opened a year ago by cmungall
  0

• Boomer: How to deal with huge cliques?

  #292 opened 3 years ago by matentzn
  3

• Docs: Add link to `README.md`

  #354 opened 2 years ago by joeflack4
  0

• Supporting the Mapping Integration workflow

  #334 opened 2 years ago by matentzn
  1

• Report posterior probability of each proposed axiom in a solution

  #335 opened 2 years ago by cmungall
  0

• Supporting Mapping QC workflow

  #333 opened 2 years ago by matentzn
  0

• boomer selects suboptimal solution in simple 3-node problem

  #158 opened 4 years ago by cmungall
  6

• json output should include "sibling" relations, for depiction in graphics

  #196 opened 3 years ago by balhoff
  3

• Output sssom mapping files rather than (just) owl

  #293 opened 2 years ago by matentzn
  1

• JSON filenames that are hashed have no mention in the `output.md` file

  #323 opened 2 years ago by hrshdhgd
  1

• What do the images mean?

  #322 opened 2 years ago by hrshdhgd
  2

• Add more documentation on how to explore output

  #261 opened 3 years ago by cmungall
  2

• allow providing prefixes declarations separate from list of prohibited within-namespace equivalents

  #289 opened 3 years ago by balhoff
  1

• What is the best way to communicate changes in axioms to a user

  #279 opened 3 years ago by matentzn
  2

• Consider not outputting cliques of size 2 or less

  #278 opened 3 years ago by matentzn
  1

• Provided more detailed documentation of window-count

  #277 opened 3 years ago by matentzn
  0

• --output-internal-axioms is dropping disjointness axioms

  #273 opened 3 years ago by balhoff
  0

• Include SiblingOf in json output

  #267 opened 3 years ago by cmungall
  2

• Report joint probability of solution, and next best solution

  #153 opened 3 years ago by cmungall
  4

• Bayesian calculation of unspecified probabilities from priors

  #269 opened 3 years ago by cmungall
  0

• Make a static site for this project

  #262 opened 3 years ago by cmungall
  0

• Boomer markdown output

  #266 opened 3 years ago by matentzn
  2

• Treat 1.0 probability as required axiom

  #255 opened 3 years ago by balhoff
  0

• accept SSSOM format

  #47 opened 5 years ago by wdduncan
  14

• Explain what boomer does in a leading paragraph?

  #191 opened 3 years ago by ddooley
  3

• Export obojson file for each clique

  #185 opened 3 years ago by cmungall
  2

• Annotate axioms in output ontology with prior probabilities

  #147 opened 4 years ago by cmungall
  2

• Incoherent results in output.txt with equivalence triads

  #49 opened 4 years ago by cmungall
  1

• Add instructions for post-processing output axioms with ROBOT

  #44 opened 4 years ago by balhoff
  1

• Exit code is set to error even when boomer succeeds

  #48 opened 5 years ago by cmungall
  1

• output files

  #37 opened 5 years ago by cmungall
  2

• equivalence in output.txt but not in ontology

  #39 opened 5 years ago by wdduncan
  9

• Using justification in posterior probability scoring

  #38 opened 5 years ago by cmungall
  1

• allow prevention of equivalence inference within a namespace

  #29 opened 5 years ago by balhoff
  0