Pinned Repositories
2015-04-BARM-Concoct
Running concoct for BARM using snakemake
alneberg
pythonkurs
alneberg.com
Personal (family) web page source code
alneberg.github.io
Personal Blog
anglerfish
Codename: Anglerfish
bu
Bioinformatic Utilities
DWUIR
Demultiplexing With UMIs in the Index Read
CONCOCT
Clustering cONtigs with COverage and ComposiTion
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
genomics-status
Tornado server for tracking samples at NGI Stockholm
alneberg's Repositories
alneberg/kallisto-tryout
Trying out kallisto for metagenomics
alneberg/2015-04-BARM-Concoct
Running concoct for BARM using snakemake
alneberg/alneberg.com
Personal (family) web page source code
alneberg/concoct-graphs
Minimal web server to handle nvd3 plotting for thesis project
alneberg/masmvali-publication
MASMVALI Publication
alneberg/django_concoct
Django pet project to keep track of concoct results and benchmarks
alneberg/scilifelab.github.io
Web portal for open source (research) projects at SciLifeLab
alneberg/masmvali
MASMVALI (Metagenomic ASseMbly VALIdation) is an assembly validator for metagenomics with known reference genomes.
alneberg/cookiecutter-pypackage
Cookiecutter template for a Python package. See https://github.com/audreyr/cookiecutter.
alneberg/yaww
Yet Another Work launching Wrapper
alneberg/scilifelab
Misc code snippets for Science For Life Laboratory
alneberg/alneberg.github.io
Personal Blog
alneberg/cosmid
Genomics database manager
alneberg/environmentmicrobedb
A Ruby on Rails application for microbial diversity data from natural environments
alneberg/concoctR
Run CONCOCT in a burst on UPPMAX for thesis project.
alneberg/GroopM
Metagenomic binning suite
alneberg/bcbio-nextgen-deploy
Suite of scripts to automatically deploy nextgen pipeline
alneberg/cookiecutter-project-template
Template for creating my preferred project structure for bioinformatic projects.
alneberg/kitchen_duty
Corridor Rules for Kitchen Duty
alneberg/pycrumbs
Bits and bytes of Python from the Internet
alneberg/test
test
alneberg/scilifelab.genologics.epp_scripts
Various site specific scripts used at SciLifeLab to be used with Genologics Clarity LIMS
alneberg/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
alneberg/bic_gaussian
alneberg/pdf-logger
Log your experiments directly to a nicely formatted pdf.
alneberg/python_koans
Python Koans - Learn Python through TDD
alneberg/alneberg
pythonkurs
alneberg/exon_protein_domain
Correlation of protein domains with exon boundaries.