alneberg's Stars
pomber/git-history
Quickly browse the history of a file from any git repository
pyutils/line_profiler
Line-by-line profiling for Python
ionelmc/cookiecutter-pylibrary
Enhanced cookiecutter template for Python libraries.
cruft/cruft
Allows you to maintain all the necessary cruft for packaging and building projects separate from the code you intentionally write. Built on-top of, and fully compatible with, CookieCutter.
bjorne/git-pa-svenska
Git på svenska
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
ParBLiSS/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
nextflow-io/patterns
A curated collection of Nextflow implementation patterns
amplab/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
MrOlm/drep
Rapid comparison and dereplication of genomes
RasmussenLab/vamb
Variational autoencoder for metagenomic binning
djc/couchdb-python
Python library for working with CouchDB
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
patrickwest/EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
NBISweden/EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
senseyeio/cupper
Update cookiecutter projects
purpledot/polar-rcx5-datalink
Command-line program to export Polar RCX5 training sessions or upload them to Strava
genomic-medicine-sweden/nallo
A long-read (PacBio and ONT) analysis pipeline written in Nextflow
7PH/vue-smart-suggest
Lightweight (<3KB) vue library offering context-sensitive suggestions in your textareas
gpertea/cdbfasta
Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files
dyxstat/MetaCC
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
ScilifelabDataCentre/dds_cli
The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
ScilifelabDataCentre/dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
SciLifeLab/umi-transfer
A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.
viq854/gattaca-public
Lightweight metagenomic binning
fasterius/singularity-in-docker
A small repository with instructions on how to build Singularity images inside a Docker container.
NationalGenomicsInfrastructure/ngipubs
Web tool to find and annotate NGI publications
michaelaasp/planets
SciFiLab/bioexcel