amathelier

Computational biologist interested in gene regulation.

Centre for Molecular Medicine Norway (NCMM), University of Oslo and Oslo University HospitalOslo, Norway

Pinned Repositories

cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Language:HTML135 13 7729
cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Language:R0 1 00
DNAshapedTFBS
Training and using TFFM/PSSM/4-bits + DNA shape classifiers
Language:Python12 2 38
DNAshapedTFBS_notebooks
Notebooks associated to the DNAshapedTFBS publication
Language:Jupyter Notebook1 3 00
JAMM
JAMM Peak Finder for Sequencing Datasets
Language:R0 2 01
meirlop
Motif Enrichment In Ranked Lists Of Peaks
Language:HTML0 1 00
TFFM
TFFM framework
Language:Python0 2 00
JAMM
JAMM Peak Finder for Sequencing Datasets
Language:R28 9 513
BiasAway
Language:Python7 6 55
TFFM
TFFM framework
Language:Python12 6 25

amathelier's Repositories

amathelier/DNAshapedTFBS
Training and using TFFM/PSSM/4-bits + DNA shape classifiers
Language:Python12 2 38
amathelier/DNAshapedTFBS_notebooks
Notebooks associated to the DNAshapedTFBS publication
Language:Jupyter Notebook1 3 00
amathelier/cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Language:R0 1 00
amathelier/JAMM
JAMM Peak Finder for Sequencing Datasets
Language:R0 2 01
amathelier/meirlop
Motif Enrichment In Ranked Lists Of Peaks
Language:HTML0 1 00
amathelier/TFFM
TFFM framework
Language:Python0 2 00