aertslab/cisTopic

Issues

• Missing resource cleanup in runWarpLDAModels

  #83 opened 5 months ago by villadswin
  0

• sha256sum download failed

  #81 opened a year ago by Dalhte
  1

• Error in metadataFeather(path) : Invalid: Not a feather file

  #82 opened 10 months ago by bunina-lab
  3

• topicsRcisTarget: Error in .column_indexes_feather(x, i)

  #38 opened 2 years ago by luzgaral
  2

• Loading Multiome data

  #80 opened 2 years ago by sylestiel
  0

• Installation error "Failed to install 'unknown package' from Github: ..."

  #79 opened 2 years ago by simozhou
  1

• cisTopicObject <- selectModel(cisTopicObject) Error in .Call("rs_createGD") : C symbol name "rs_createGD" not in load table

  #75 opened 2 years ago by yuxuanChen777
  1

• Downloading .feather file

  #41 opened 2 years ago by jf292
  2

• Running Cistopic

  #78 opened 2 years ago by Sayyam-Shah
  1

• add cisTopic output to Seurat object?

  #77 opened 2 years ago by klgoss
  1

• Unused argument error while running topicsRcisTarget

  #76 opened 2 years ago by debbie28
  0

• Installation issue

  #69 opened 2 years ago by andrewjkwok
  2

• Column 4 ['rep..TF_lowConf...length.peaks..'] of item 2 is missing in item 1.

  #56 opened 2 years ago by sylestiel
  3

• Ununsed Arguement error in cisTopic/TcisTarget

  #74 opened 2 years ago by AAA-3
  1

• How can I run cisTopic in R 4.0

  #73 opened 2 years ago by Paul-YPH
  2

• tSNE Clustering Thresholds

  #71 opened 2 years ago by AAA-3
  1

• LDA run with Python and LogLikelihhod

  #72 opened 2 years ago by fvalle1
  1

• distinguishing of broken cells from true low depth cells

  #49 opened 2 years ago by wangmeijiao
  3

• createcisTopicObject and genomic coordinates incompatibility error

  #67 opened 2 years ago by simozhou
  3

• annotateRegions with own dataset

  #66 opened 2 years ago by sinkahak
  1

• possibility to use BAM files from bulk ChIP

  #65 opened 2 years ago by abedkurdi
  1

• installation issue with ubuntu 20.04

  #64 opened 2 years ago by vjbaskar
  3

• maximal median size of population peaks

  #62 opened 2 years ago by robinweide
  1

• cistopic object to archR

  #61 opened 2 years ago by ytang0831
  1

• Rsubread should be listed as a required package

  #60 opened 2 years ago by kridsadakorn
  2

• The function runModels is missing

  #59 opened 2 years ago by kridsadakorn
  2

• subset a list of cells

  #52 opened 2 years ago by hejing3283
  1

• getBigwigFiles functions error

  #51 opened 2 years ago by ytang0831
  2

• Installation Trouble from cisTopic/R/RunModels.R

  #46 opened 2 years ago by Toseph
  2

• Errors when trying to fit models with less than three topic numbers

  #44 opened 2 years ago by wkopp
  5

• Trouble with installation

  #42 opened 2 years ago by mvinyard
  4

• Plotting cluster info signaturesHeatmap

  #37 opened 2 years ago by ccruizm
  1

• error in cisTopic(logLikelihoodByIter)

  #35 opened 2 years ago by Sububioinfo
  5

• input from fragments.tsv.gz?

  #68 opened 2 years ago by JBreunig
  1

• Tutorial Dataset files

  #70 opened 2 years ago by AAA-3
  1

• Question about createcisTopicObject

  #63 opened 4 years ago by kridsadakorn
  1

• Is aggregation of dataset required for cisTopic

  #57 opened 4 years ago by sylestiel
  2

• license

  #58 opened 4 years ago by abotzki
  2

• Error in metadataFeather(path)

  #55 opened 4 years ago by sylestiel
  2

• How to obtain Signatures for our purposes

  #54 opened 4 years ago by sylestiel
  0

• Integration using Harmony as described in Drosophila eye-antennal disc preprint

  #53 opened 4 years ago by liaojinyue
  4

• cellTopicHeatmap - annotations

  #45 opened 5 years ago by cmuus
  3

• The choice of the bed file

  #50 opened 4 years ago by ytang0831
  5

• how does the cisTopic LDA algorithm treat low-depth cells ?

  #48 opened 4 years ago by wangmeijiao
  0

• How to load multiple 10X runs to cisTopic?

  #39 opened 4 years ago by cartal
  2

• A bug when running runWarpLDAModels() with exactly one topic

  #47 opened 4 years ago by Van1yu3
  5

• Undefined functions

  #43 opened 5 years ago by wkopp
  2

• Error of the 'runCGSModels' function in cisTopic v0.3.0

  #40 opened 5 years ago by Van1yu3
  4

• Export the topic-signature matrix

  #36 opened 5 years ago by arutik
  2

• Comparing untreated vs treated cells

  #33 opened 5 years ago by ccruizm
  6